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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043272 ID=TCONS_00043272|Name=TCONS_00043272|organism=Clytia hemisphaerica|type=transcript|length=747bp
CGCTTCCTTCGCCTGCAATTTCCGATGCTCCGTGGACTGCGCTTTCGAGA
CGCATTCCTTCTCTTCGGAGTGAGTTTAGATCCCATGAGTTTTTCAGTGC
CTCCTCTCTAATTTCTCCATTCAGTGTACCAATTATGATTTGATCACGGA
CTGCGGTTGTTGCACCTGTACAATTTGCATTCTCACATTGGAATTGGCAA
TGGTTACTTTCTTTTTCAACGCGATTGCAGAAAGCAATGAAGGCTTCATC
CTTAACTTGGTGTAAGGACCGGAATTGAAAATGCTTGAGGGTCAGGTTTT
CTGTTGGTTTGTAATAGGCATGCATAGCTTCTTTAAATTGTGTCCATGTG
GCTTCCTTTCTTGCCTTTTCTACTGGCGAGGTCATCGTCCAGTCGTTTAC
AAGGCGTCGTGAGGAATATATTCCAAGAAATTTTGCCACCATGTCTTTTG
CCTTCCATTGATCGACGATTGCATCGTATTCTTCAATGTTGGGATTCCTG
TTGCCGTTTCCCATTTTCCACCTCTGCAATGCCGAATCTAATGACACTTT
AGGCGGGTCCGGATACATTGCCGCATACCGCAATTCATAATAAAAGGTGA
ATTCCATGAATGCCTTGAGCGTGTCATCCGGATGGCAGTCAGGGTCAAAG
TAGAGTTGCGTTGTGTTTGAATTCGTATTTACAGACCTGGCTCCTTGGCC
AGGTGGTTCACCAGCCGTTGAAAGCTGAGTCAACAGACCTGATACTC Run BLAST on NCBI protein sequence of TCONS_00043272-protein >TCONS_00043272-protein ID=TCONS_00043272-protein|Name=TCONS_00043272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
VSGLLTQLSTAGEPPGQGARSVNTNSNTTQLYFDPDCHPDDTLKAFMEFT
FYYELRYAAMYPDPPKVSLDSALQRWKMGNGNRNPNIEEYDAIVDQWKAK
DMVAKFLGIYSSRRLVNDWTMTSPVEKARKEATWTQFKEAMHAYYKPTEN
LTLKHFQFRSLHQVKDEAFIAFCNRVEKESNHCQFQCENANCTGATTAVR
DQIIIGTLNGEIREEALKNSWDLNSLRREGMRLESAVHGASEIAGEGS Run BLAST on NCBI transcript from alignment at sc0004082:1087..1833 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043272 ID=TCONS_00043272|Name=TCONS_00043272|organism=Clytia hemisphaerica|type=transcript|length=747bp|location=Sequence derived from alignment at sc0004082:1087..1833 (Clytia hemisphaerica)
GAGTATCAGGTCTGTTGACTCAGCTTTCAACGGCTGGTGAACCACCTGGC
CAAGGAGCCAGGTCTGTAAATACGAATTCAAACACAACGCAACTCTACTT
TGACCCTGACTGCCATCCGGATGACACGCTCAAGGCATTCATGGAATTCA
CCTTTTATTATGAATTGCGGTATGCGGCAATGTATCCGGACCCGCCTAAA
GTGTCATTAGATTCGGCATTGCAGAGGTGGAAAATGGGAAACGGCAACAG
GAATCCCAACATTGAAGAATACGATGCAATCGTCGATCAATGGAAGGCAA
AAGACATGGTGGCAAAATTTCTTGGAATATATTCCTCACGACGCCTTGTA
AACGACTGGACGATGACCTCGCCAGTAGAAAAGGCAAGAAAGGAAGCCAC
ATGGACACAATTTAAAGAAGCTATGCATGCCTATTACAAACCAACAGAAA
ACCTGACCCTCAAGCATTTTCAATTCCGGTCCTTACACCAAGTTAAGGAT
GAAGCCTTCATTGCTTTCTGCAATCGCGTTGAAAAAGAAAGTAACCATTG
CCAATTCCAATGTGAGAATGCAAATTGTACAGGTGCAACAACCGCAGTCC
GTGATCAAATCATAATTGGTACACTGAATGGAGAAATTAGAGAGGAGGCA
CTGAAAAACTCATGGGATCTAAACTCACTCCGAAGAGAAGGAATGCGTCT
CGAAAGCGCAGTCCACGGAGCATCGGAAATTGCAGGCGAAGGAAGCG Coding sequence (CDS) from alignment at sc0004082:1087..1833 >TCONS_00043272 ID=TCONS_00043272|Name=TCONS_00043272|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0004082:1087..1833 (Clytia hemisphaerica)
GTATCAGGTCTGTTGACTCAGCTTTCAACGGCTGGTGAACCACCTGGCCA
AGGAGCCAGGTCTGTAAATACGAATTCAAACACAACGCAACTCTACTTTG
ACCCTGACTGCCATCCGGATGACACGCTCAAGGCATTCATGGAATTCACC
TTTTATTATGAATTGCGGTATGCGGCAATGTATCCGGACCCGCCTAAAGT
GTCATTAGATTCGGCATTGCAGAGGTGGAAAATGGGAAACGGCAACAGGA
ATCCCAACATTGAAGAATACGATGCAATCGTCGATCAATGGAAGGCAAAA
GACATGGTGGCAAAATTTCTTGGAATATATTCCTCACGACGCCTTGTAAA
CGACTGGACGATGACCTCGCCAGTAGAAAAGGCAAGAAAGGAAGCCACAT
GGACACAATTTAAAGAAGCTATGCATGCCTATTACAAACCAACAGAAAAC
CTGACCCTCAAGCATTTTCAATTCCGGTCCTTACACCAAGTTAAGGATGA
AGCCTTCATTGCTTTCTGCAATCGCGTTGAAAAAGAAAGTAACCATTGCC
AATTCCAATGTGAGAATGCAAATTGTACAGGTGCAACAACCGCAGTCCGT
GATCAAATCATAATTGGTACACTGAATGGAGAAATTAGAGAGGAGGCACT
GAAAAACTCATGGGATCTAAACTCACTCCGAAGAGAAGGAATGCGTCTCG
AAAGCGCAGTCCACGGAGCATCGGAAATTGCAGGCGAAGGAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043272-exon-sc0004082-1491911889:1087..1833 | TCONS_00043272-exon-sc0004082-1491911889:1087..1833 | Clytia hemisphaerica | exon |
| TCONS_00043272-exon-sc0004082-1510915933:1087..1833 | TCONS_00043272-exon-sc0004082-1510915933:1087..1833 | Clytia hemisphaerica | exon |
| TCONS_00043272-exon-sc0004082-1575043694:1087..1833 | TCONS_00043272-exon-sc0004082-1575043694:1087..1833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004082 | supercontig | sc0004082:1087..1833 . |
Blast
The following BLAST results are available for this feature:
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