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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043267 ID=TCONS_00043267|Name=TCONS_00043267|organism=Clytia hemisphaerica|type=transcript|length=1030bp
CATCGTTGGGGAGCCTGGTGTAGGAATCTGTGTTAGCTTAGTTATCAAGC
GTCGAACTTTTCGTGAGTTTGAAAGGACGTTGCCACATCGTTGGGGAGCC
TGGTACAAGCCCAACCCCTTTGATATGCAAGATCACTTCAGAATTAACAG
GCTCCGGCATCTGTGTCAATTTATCTACCAAGCGTCGCACTTCCACCTTA
TGGTCCTCTTGAAGTTTACTTAGAAAAGTGTCAATGCCCGAAGTAAAATC
TCCAACAGTCAATTTTGTCAGTTCAGACTTTGTGGCACTGAAAGCCAATC
TCTCTTCTTGGGCACTGGTTATGTCATTCAACAAATCATCGGCAAGCGAT
GCATTGTTTAATGAAATGTATTCGCTTGGTAAGCTTTTAAAGCATTTAAT
AACGTTGGGCCCAAGTCCATATGGATACCTCACATTTATAGCTAAAAGCT
TACCCTCCAGAATACACCAGAGGTCTTCTGGGGTGTAATCGGCCAGATGA
AATCTTTGCTTTACTCTTCTCAAGTACCCGCTGTTGACTTTCAGCAAAGA
TTTCATGTCTGACTGATAGCCACAGAAAATTATAACGGGATATTGGACTT
TGGAATTTGGTGGTGGTGGCAAAAGATATCTCATTATCAAATCCAAAGCT
CTCTTTCCATAATCTTTTGAGGATTTGTCCTCGGACGATAAATTGTATGC
CTCGTCAACAAAAAGGATTTTTCCAAAGCTTGattttatgagtttttcag
tACCAGTTTCAGTGCCACCAATGTGGTCTGAAATCAAATCATTTCGTTGG
ACTTCCACAATTTCCGGCTTCTTTAAGATGCCGAGGTCGAAGAGGATTCC
TGAAATGGAAAGAAACGCAACTGCAACATTCAAACTACTCTATATGAAGA
CTTTAAATTATTAATGGGTTACAGTATGGGATTCAACACTTGCTACNGAA
GTTGCCATGGACCGTCAAGCTTGGAAAGACCTGGTCATGAGGAGCAAGGG
GCCTGTTCAGGCCTGAGCATCTAAGCAAGT Run BLAST on NCBI protein sequence of TCONS_00043267-protein >TCONS_00043267-protein ID=TCONS_00043267-protein|Name=TCONS_00043267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MRYLLPPPPNSKVQYPVIIFCGYQSDMKSLLKVNSGYLRRVKQRFHLADY
TPEDLWCILEGKLLAINVRYPYGLGPNVIKCFKSLPSEYISLNNASLADD
LLNDITSAQEERLAFSATKSELTKLTVGDFTSGIDTFLSKLQEDHKVEVR
RLVDKLTQMPEPVNSEVILHIKGVGLVPGSPTMWQRPFKLTKSSTLDN Run BLAST on NCBI transcript from alignment at sc0004078:4153..5182 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043267 ID=TCONS_00043267|Name=TCONS_00043267|organism=Clytia hemisphaerica|type=transcript|length=1030bp|location=Sequence derived from alignment at sc0004078:4153..5182 (Clytia hemisphaerica)
ACTTGCTTAGATGCTCAGGCCTGAACAGGCCCCTTGCTCCTCATGACCAG
GTCTTTCCAAGCTTGACGGTCCATGGCAACTTCNGTAGCAAGTGTTGAAT
CCCATACTGTAACCCATTAATAATTTAAAGTCTTCATATAGAGTAGTTTG
AATGTTGCAGTTGCGTTTCTTTCCATTTCAGGAATCCTCTTCGACCTCGG
CATCTTAAAGAAGCCGGAAATTGTGGAAGTCCAACGAAATGATTTGATTT
CAGACCACATTGGTGGCACTGAAACTGGTactgaaaaactcataaaatCA
AGCTTTGGAAAAATCCTTTTTGTTGACGAGGCATACAATTTATCGTCCGA
GGACAAATCCTCAAAAGATTATGGAAAGAGAGCTTTGGATTTGATAATGA
GATATCTTTTGCCACCACCACCAAATTCCAAAGTCCAATATCCCGTTATA
ATTTTCTGTGGCTATCAGTCAGACATGAAATCTTTGCTGAAAGTCAACAG
CGGGTACTTGAGAAGAGTAAAGCAAAGATTTCATCTGGCCGATTACACCC
CAGAAGACCTCTGGTGTATTCTGGAGGGTAAGCTTTTAGCTATAAATGTG
AGGTATCCATATGGACTTGGGCCCAACGTTATTAAATGCTTTAAAAGCTT
ACCAAGCGAATACATTTCATTAAACAATGCATCGCTTGCCGATGATTTGT
TGAATGACATAACCAGTGCCCAAGAAGAGAGATTGGCTTTCAGTGCCACA
AAGTCTGAACTGACAAAATTGACTGTTGGAGATTTTACTTCGGGCATTGA
CACTTTTCTAAGTAAACTTCAAGAGGACCATAAGGTGGAAGTGCGACGCT
TGGTAGATAAATTGACACAGATGCCGGAGCCTGTTAATTCTGAAGTGATC
TTGCATATCAAAGGGGTTGGGCTTGTACCAGGCTCCCCAACGATGTGGCA
ACGTCCTTTCAAACTCACGAAAAGTTCGACGCTTGATAACTAAGCTAACA
CAGATTCCTACACCAGGCTCCCCAACGATG Coding sequence (CDS) from alignment at sc0004078:4153..5182 >TCONS_00043267 ID=TCONS_00043267|Name=TCONS_00043267|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0004078:4153..5182 (Clytia hemisphaerica)
ATGAGATATCTTTTGCCACCACCACCAAATTCCAAAGTCCAATATCCCGT
TATAATTTTCTGTGGCTATCAGTCAGACATGAAATCTTTGCTGAAAGTCA
ACAGCGGGTACTTGAGAAGAGTAAAGCAAAGATTTCATCTGGCCGATTAC
ACCCCAGAAGACCTCTGGTGTATTCTGGAGGGTAAGCTTTTAGCTATAAA
TGTGAGGTATCCATATGGACTTGGGCCCAACGTTATTAAATGCTTTAAAA
GCTTACCAAGCGAATACATTTCATTAAACAATGCATCGCTTGCCGATGAT
TTGTTGAATGACATAACCAGTGCCCAAGAAGAGAGATTGGCTTTCAGTGC
CACAAAGTCTGAACTGACAAAATTGACTGTTGGAGATTTTACTTCGGGCA
TTGACACTTTTCTAAGTAAACTTCAAGAGGACCATAAGGTGGAAGTGCGA
CGCTTGGTAGATAAATTGACACAGATGCCGGAGCCTGTTAATTCTGAAGT
GATCTTGCATATCAAAGGGGTTGGGCTTGTACCAGGCTCCCCAACGATGT
GGCAACGTCCTTTCAAACTCACGAAAAGTTCGACGCTTGATAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043267-exon-sc0004078-1491911889:4153..5182 | TCONS_00043267-exon-sc0004078-1491911889:4153..5182 | Clytia hemisphaerica | exon |
| TCONS_00043267-exon-sc0004078-1510915933:4153..5182 | TCONS_00043267-exon-sc0004078-1510915933:4153..5182 | Clytia hemisphaerica | exon |
| TCONS_00043267-exon-sc0004078-1575043694:4153..5182 | TCONS_00043267-exon-sc0004078-1575043694:4153..5182 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004078 | supercontig | sc0004078:4153..5182 . |
Blast
The following BLAST results are available for this feature:
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