TCONS_00043263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043263
Unique NameTCONS_00043263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043263 ID=TCONS_00043263|Name=TCONS_00043263|organism=Clytia hemisphaerica|type=transcript|length=588bp
AGATTAGGACCCTTGTTGACACCATCACTAAAAGGTTTGAGGTTTGTTCC
CGTCTTCTCAGGTATAGTTAGAGGATCAGGGACCTCAGAAAGACTTTCAA
ACGAGGCCACTGAGATTCAGGCATAATTAGAAACTCAGGACCATAAAATC
ATAATTTACAACCAGCTAGACATGCTGGCTTAGACCCCCGGGACGCAATG
TCCGAAGGATTTTGCTTTGTAGCAACTAATTTCAGTTCAATCGAGAGGGA
TTCAAAATTTCGTCTAATCTCATCAGAAATATTCTTAATATATCTATCTT
GTTTTCTCGAAGTTTCAATGTTCTTGACCCAACAGTAAGCAACACTACTG
TCAGTCCATAcagtaaatttttcaaattcaaagttaATTTCTAAGTGTCT
CTTAACAACATTCATGAGACGTGATACAATAAGTATAGCTACCAACTCCA
TTCTGGGTGTCGTCAACTTCTGATTTCGTCTTGATTGGATTCACGTGTGA
CTTTGATGTGACGAGGCTTGTCTTGATATCACCATCCTTTGATACGATTC
GTGTGTAGATACAGCAACCATGTGCGTCGTCAGAAGCA
Run BLAST on NCBI

protein sequence of TCONS_00043263-protein

>TCONS_00043263-protein ID=TCONS_00043263-protein|Name=TCONS_00043263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MELVAILIVSRLMNVVKRHLEINFEFEKFTVWTDSSVAYCWVKNIETSRK
QDRYIKNISDEIRRNFESLSIELKLVATKQNPSDIASRGSKPACLAGCKL
Run BLAST on NCBI

transcript from alignment at sc0004072:7860..8447

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043263 ID=TCONS_00043263|Name=TCONS_00043263|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0004072:7860..8447 (Clytia hemisphaerica)
TGCTTCTGACGACGCACATGGTTGCTGTATCTACACACGAATCGTATCAA
AGGATGGTGATATCAAGACAAGCCTCGTCACATCAAAGTCACACGTGAAT
CCAATCAAGACGAAATCAGAAGTTGACGACACCCAGAATGGAGTTGGTAG
CTATACTTATTGTATCACGTCTCATGAATGTTGTTAAGAGACACTTAGAA
ATtaactttgaatttgaaaaatttactgTATGGACTGACAGTAGTGTTGC
TTACTGTTGGGTCAAGAACATTGAAACTTCGAGAAAACAAGATAGATATA
TTAAGAATATTTCTGATGAGATTAGACGAAATTTTGAATCCCTCTCGATT
GAACTGAAATTAGTTGCTACAAAGCAAAATCCTTCGGACATTGCGTCCCG
GGGGTCTAAGCCAGCATGTCTAGCTGGTTGTAAATTATGATTTTATGGTC
CTGAGTTTCTAATTATGCCTGAATCTCAGTGGCCTCGTTTGAAAGTCTTT
CTGAGGTCCCTGATCCTCTAACTATACCTGAGAAGACGGGAACAAACCTC
AAACCTTTTAGTGATGGTGTCAACAAGGGTCCTAATCT

Coding sequence (CDS) from alignment at sc0004072:7860..8447

>TCONS_00043263 ID=TCONS_00043263|Name=TCONS_00043263|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0004072:7860..8447 (Clytia hemisphaerica)
ATGGAGTTGGTAGCTATACTTATTGTATCACGTCTCATGAATGTTGTTAA
GAGACACTTAGAAATtaactttgaatttgaaaaatttactgTATGGACTG
ACAGTAGTGTTGCTTACTGTTGGGTCAAGAACATTGAAACTTCGAGAAAA
CAAGATAGATATATTAAGAATATTTCTGATGAGATTAGACGAAATTTTGA
ATCCCTCTCGATTGAACTGAAATTAGTTGCTACAAAGCAAAATCCTTCGG
ACATTGCGTCCCGGGGGTCTAAGCCAGCATGTCTAGCTGGTTGTAAATTA
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026976XLOC_026976Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043263-proteinTCONS_00043263-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043263-exon-sc0004072-1491911889:7860..8447TCONS_00043263-exon-sc0004072-1491911889:7860..8447Clytia hemisphaericaexon
TCONS_00043263-exon-sc0004072-1510915933:7860..8447TCONS_00043263-exon-sc0004072-1510915933:7860..8447Clytia hemisphaericaexon
TCONS_00043263-exon-sc0004072-1575043694:7860..8447TCONS_00043263-exon-sc0004072-1575043694:7860..8447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004072supercontigsc0004072:7860..8447 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87503	1.76051	1.01145	0.675318	13.4226	12.4992	13.8339	14.9072	2.88607	4.7839	8.29515	3.63772	4.83521	4.03889	3.07813	4.4223	3.27838	3.65529	1.46636	4.80908	6.50603	7.23882	2.13712	2.88924	2.72655	5.09196	5.02167	5.62114	6.82434	6.24236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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