|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043255 ID=TCONS_00043255|Name=TCONS_00043255|organism=Clytia hemisphaerica|type=transcript|length=743bp
GCCCAATCAGAAGTGAACTTTCTTAAGCTTTCAAATATTAAACGTGAGAG
CGATGAACGTTATGAGACATTCTTCCAAAGAATTATTGCCCACTTGGAAG
ACAACCTCCTCACTGTGGAATCAGGTTTAATTCACGATGGCGCTGCACCA
ACAGCTAATGAAGAAATGTCACCAACACTAGAACGCTTAGCAGTATATAT
GTGGTTAACGTTAATAGACGAACGCCTCCCAGCACATGTTTCGAGAGTTT
ACGCCCACGACCTACAATCAAAGACTCTTAAAGAAATACAACCTCAGCTA
GCCGAAGCTATGGACTGTCTCCTTTCTGATTTATCTGTCCAAGATGAGAT
TTCAGTAAATTACACCAACTCCCGACGTCCAAAGCAACGTCAAACGTTTC
AACGTCGCGatcaacgtcgtttcaacgccAAAGGTGTTAGCAACTCCAAA
TCATGCATTCTCTGCAAATCAGCTGGAAGGAATCATCAGGGTCACGACAT
TGCCGGATGTCATTTTTTGTcccaatttgaaaaattgaaaatcgctGACG
CACTAACCGTTGACGTTTCTGATGATGTACCCCAGGAAGCAGAACATTTC
GAAAGTGATCAATTTCAAGTCACGCCAGAGTCTACAGTACAAAAAGTCCA
ATGTGATTCTTCCCCTTACTTCCATGCATTCTACCAACATCATCCAGCTC
ATATTGTGATCGACACAGGCGCTACTTCATCACTCATCTCGAG Run BLAST on NCBI protein sequence of TCONS_00043255-protein >TCONS_00043255-protein ID=TCONS_00043255-protein|Name=TCONS_00043255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
AQSEVNFLKLSNIKRESDERYETFFQRIIAHLEDNLLTVESGLIHDGAAP
TANEEMSPTLERLAVYMWLTLIDERLPAHVSRVYAHDLQSKTLKEIQPQL
AEAMDCLLSDLSVQDEISVNYTNSRRPKQRQTFQRRDQRRFNAKGVSNSK
SCILCKSAGRNHQGHDIAGCHFLSQFEKLKIADALTVDVSDDVPQEAEHF
ESDQFQVTPESTVQKVQCDSSPYFHAFYQHHPAHIVIDTGATSSLIS Run BLAST on NCBI transcript from alignment at sc0004067:3634..4376 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043255 ID=TCONS_00043255|Name=TCONS_00043255|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0004067:3634..4376 (Clytia hemisphaerica)
CTCGAGATGAGTGATGAAGTAGCGCCTGTGTCGATCACAATATGAGCTGG
ATGATGTTGGTAGAATGCATGGAAGTAAGGGGAAGAATCACATTGGACTT
TTTGTACTGTAGACTCTGGCGTGACTTGAAATTGATCACTTTCGAAATGT
TCTGCTTCCTGGGGTACATCATCAGAAACGTCAACGGTTAGTGCGTCagc
gattttcaatttttcaaattgggACAAAAAATGACATCCGGCAATGTCGT
GACCCTGATGATTCCTTCCAGCTGATTTGCAGAGAATGCATGATTTGGAG
TTGCTAACACCTTTggcgttgaaacgacgttgatCGCGACGTTGAAACGT
TTGACGTTGCTTTGGACGTCGGGAGTTGGTGTAATTTACTGAAATCTCAT
CTTGGACAGATAAATCAGAAAGGAGACAGTCCATAGCTTCGGCTAGCTGA
GGTTGTATTTCTTTAAGAGTCTTTGATTGTAGGTCGTGGGCGTAAACTCT
CGAAACATGTGCTGGGAGGCGTTCGTCTATTAACGTTAACCACATATATA
CTGCTAAGCGTTCTAGTGTTGGTGACATTTCTTCATTAGCTGTTGGTGCA
GCGCCATCGTGAATTAAACCTGATTCCACAGTGAGGAGGTTGTCTTCCAA
GTGGGCAATAATTCTTTGGAAGAATGTCTCATAACGTTCATCGCTCTCAC
GTTTAATATTTGAAAGCTTAAGAAAGTTCACTTCTGATTGGGC Coding sequence (CDS) from alignment at sc0004067:3634..4376 >TCONS_00043255 ID=TCONS_00043255|Name=TCONS_00043255|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at sc0004067:3634..4376 (Clytia hemisphaerica)
CGAGATGAGTGATGAAGTAGCGCCTGTGTCGATCACAATATGAGCTGGAT
GATGTTGGTAGAATGCATGGAAGTAAGGGGAAGAATCACATTGGACTTTT
TGTACTGTAGACTCTGGCGTGACTTGAAATTGATCACTTTCGAAATGTTC
TGCTTCCTGGGGTACATCATCAGAAACGTCAACGGTTAGTGCGTCagcga
ttttcaatttttcaaattgggACAAAAAATGACATCCGGCAATGTCGTGA
CCCTGATGATTCCTTCCAGCTGATTTGCAGAGAATGCATGATTTGGAGTT
GCTAACACCTTTggcgttgaaacgacgttgatCGCGACGTTGAAACGTTT
GACGTTGCTTTGGACGTCGGGAGTTGGTGTAATTTACTGAAATCTCATCT
TGGACAGATAAATCAGAAAGGAGACAGTCCATAGCTTCGGCTAGCTGAGG
TTGTATTTCTTTAAGAGTCTTTGATTGTAGGTCGTGGGCGTAAACTCTCG
AAACATGTGCTGGGAGGCGTTCGTCTATTAACGTTAACCACATATATACT
GCTAAGCGTTCTAGTGTTGGTGACATTTCTTCATTAGCTGTTGGTGCAGC
GCCATCGTGAATTAAACCTGATTCCACAGTGAGGAGGTTGTCTTCCAAGT
GGGCAATAATTCTTTGGAAGAATGTCTCATAACGTTCATCGCTCTCACGT
TTAATATTTGAAAGCTTAAGAAAGTTCACTTCTGATTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043255-exon-sc0004067-1491911889:3634..4376 | TCONS_00043255-exon-sc0004067-1491911889:3634..4376 | Clytia hemisphaerica | exon |
| TCONS_00043255-exon-sc0004067-1510915933:3634..4376 | TCONS_00043255-exon-sc0004067-1510915933:3634..4376 | Clytia hemisphaerica | exon |
| TCONS_00043255-exon-sc0004067-1575043694:3634..4376 | TCONS_00043255-exon-sc0004067-1575043694:3634..4376 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004067 | supercontig | sc0004067:3634..4376 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001969 | Aspartic_peptidase_AS |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
Blast
The following BLAST results are available for this feature:
|
