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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043253 ID=TCONS_00043253|Name=TCONS_00043253|organism=Clytia hemisphaerica|type=transcript|length=1096bp
GCCCGATAGTTAAAGGAGTTCAAGCAAACTGCATTTTTTGGCAGTGGAAG
TTTAATTTGAGCGCCTCTTCTAAGTTTTGGAGGACGTGGGGAATCGTTAT
CCTTATCATCACTCCCTGTTTCACGCTGGATAATTTCAAACTGGTCCCAG
CCTAGTTTATTTCCGATATTATTGACGCTCTTATAAACTTCCACTAACAT
GAGTTGGAGGTTTTGAGTATGGATAGACGCACGATTTGCTTTAACCAAAA
GCTCGTCATAATCAAGATTTAGAAGATTTTCTTTAGCTCTAAGAGCTCTG
TAGTGAGCTTCAGTCAAAAGATTATGTGCCATCTTACTACAAAACATCCA
AATGAGAGGGCAATCTACACAACTACACAACTACAGGTTGCAGCCTCGAT
GGTTCAGATTAGCCAttttttcactatctcgtaaagtaaaagctttccAA
ATTATCTAACCATGGCCAACGATAACCATTGACCCTAAAGTGTgtatcag
gggtggtcaaagcaaattgTTCAGGAAATGAGCTACTGTAGAATGTTAAG
CAACCCCAgacctgacccgaaaattggagttgcttatataAAGTGTGTAT
TCAAATTACATAAACACAAcagcaaatttttatttatttgtagGTCACAC
CGTCGGTTGGTATTCAATTCACTTTCACATCAAAACAATACACTATCTAC
CCCTTTGGCAAGACTGATGACATTCCCACAGATCCTCTATCATTCAAAGC
ATACTGGTCAAGCTCATCTCATGAACTTCTTAATCAACTAACTGACGACC
AAACCACATTCAAAAACTGTTTTCAAAGCCAATTTCTGAACCAAAACGAA
GATAGACAATTCTACTACCTTGGGGTTCATCTTACATCGAGTACAACAGA
CAATATTGAAACACAAGTTGCATTGTTCGGAAACCAAGATGAAGTTGCCA
TATTCTTCGAATATCATCGATTCATAACAAACACACAGATTCAAAAATAC
TCTTACGAGATCCCATTATCAGATCAACATTACCAGCATACTTCATCAAA
TATAGATGAAGAGAGTACTTGCAGACAACCAGGGTTCTTTGTTTAC Run BLAST on NCBI protein sequence of TCONS_00043253-protein >TCONS_00043253-protein ID=TCONS_00043253-protein|Name=TCONS_00043253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MFCSKMAHNLLTEAHYRALRAKENLLNLDYDELLVKANRASIHTQNLQLM
LVEVYKSVNNIGNKLGWDQFEIIQRETGSDDKDNDSPRPPKLRRGAQIKL
PLPKNAVCLNSFNYR Run BLAST on NCBI transcript from alignment at sc0004066:2..1097 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043253 ID=TCONS_00043253|Name=TCONS_00043253|organism=Clytia hemisphaerica|type=transcript|length=1096bp|location=Sequence derived from alignment at sc0004066:2..1097 (Clytia hemisphaerica)
GTAAACAAAGAACCCTGGTTGTCTGCAAGTACTCTCTTCATCTATATTTG
ATGAAGTATGCTGGTAATGTTGATCTGATAATGGGATCTCGTAAGAGTAT
TTTTGAATCTGTGTGTTTGTTATGAATCGATGATATTCGAAGAATATGGC
AACTTCATCTTGGTTTCCGAACAATGCAACTTGTGTTTCAATATTGTCTG
TTGTACTCGATGTAAGATGAACCCCAAGGTAGTAGAATTGTCTATCTTCG
TTTTGGTTCAGAAATTGGCTTTGAAAACAGTTTTTGAATGTGGTTTGGTC
GTCAGTTAGTTGATTAAGAAGTTCATGAGATGAGCTTGACCAGTATGCTT
TGAATGATAGAGGATCTGTGGGAATGTCATCAGTCTTGCCAAAGGGGTAG
ATAGTGTATTGTTTTGATGTGAAAGTGAATTGAATACCAACCGACGGTGT
GACctacaaataaataaaaatttgctgTTGTGTTTATGTAATTTGAATAC
ACACTTtatataagcaactccaattttcgggtcaggtcTGGGGTTGCTTA
ACATTCTACAGTAGCTCATTTCCTGAAcaatttgctttgaccacccctga
tacACACTTTAGGGTCAATGGTTATCGTTGGCCATGGTTAGATAATTTgg
aaagcttttactttacgagatagtgaaaaaaTGGCTAATCTGAACCATCG
AGGCTGCAACCTGTAGTTGTGTAGTTGTGTAGATTGCCCTCTCATTTGGA
TGTTTTGTAGTAAGATGGCACATAATCTTTTGACTGAAGCTCACTACAGA
GCTCTTAGAGCTAAAGAAAATCTTCTAAATCTTGATTATGACGAGCTTTT
GGTTAAAGCAAATCGTGCGTCTATCCATACTCAAAACCTCCAACTCATGT
TAGTGGAAGTTTATAAGAGCGTCAATAATATCGGAAATAAACTAGGCTGG
GACCAGTTTGAAATTATCCAGCGTGAAACAGGGAGTGATGATAAGGATAA
CGATTCCCCACGTCCTCCAAAACTTAGAAGAGGCGCTCAAATTAAACTTC
CACTGCCAAAAAATGCAGTTTGCTTGAACTCCTTTAACTATCGGGC Coding sequence (CDS) from alignment at sc0004066:2..1097 >TCONS_00043253 ID=TCONS_00043253|Name=TCONS_00043253|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0004066:2..1097 (Clytia hemisphaerica)
ATGTTTTGTAGTAAGATGGCACATAATCTTTTGACTGAAGCTCACTACAG
AGCTCTTAGAGCTAAAGAAAATCTTCTAAATCTTGATTATGACGAGCTTT
TGGTTAAAGCAAATCGTGCGTCTATCCATACTCAAAACCTCCAACTCATG
TTAGTGGAAGTTTATAAGAGCGTCAATAATATCGGAAATAAACTAGGCTG
GGACCAGTTTGAAATTATCCAGCGTGAAACAGGGAGTGATGATAAGGATA
ACGATTCCCCACGTCCTCCAAAACTTAGAAGAGGCGCTCAAATTAAACTT
CCACTGCCAAAAAATGCAGTTTGCTTGAACTCCTTTAACTATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043253-exon-sc0004066-1491911889:2..1097 | TCONS_00043253-exon-sc0004066-1491911889:2..1097 | Clytia hemisphaerica | exon |
| TCONS_00043253-exon-sc0004066-1510915933:2..1097 | TCONS_00043253-exon-sc0004066-1510915933:2..1097 | Clytia hemisphaerica | exon |
| TCONS_00043253-exon-sc0004066-1575043694:2..1097 | TCONS_00043253-exon-sc0004066-1575043694:2..1097 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004066 | supercontig | sc0004066:2..1097 . |
Blast
The following BLAST results are available for this feature:
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