TCONS_00043252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043252
Unique NameTCONS_00043252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043252 ID=TCONS_00043252|Name=TCONS_00043252|organism=Clytia hemisphaerica|type=transcript|length=276bp
CAATCTCGTTTGGAGAAGTCACTGACGTCACAATTCATCACTTCTCTGAT
GCTTCGACACTGGGATATGGTCAGTGCAGCTATCTTCGTCTTGAGAATGA
AAGAGGAGAAGTCAATGTCAGTTTTCTCATGGGCAAGTCACAAGTCAGTC
CATTGAAACAAGTTTCAGTACCACGACTAGAGCTGACAGCAGCTGTAACC
TCGGTAAAAGTAAGCAGCCTGTTGGACAAAGAACTTGAGGTGATTCCTAG
AGGTATCTACTATTGGACAGACAGTG
Run BLAST on NCBI

transcript from alignment at sc0004065:1005..1280

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043252 ID=TCONS_00043252|Name=TCONS_00043252|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0004065:1005..1280 (Clytia hemisphaerica)
CACTGTCTGTCCAATAGTAGATACCTCTAGGAATCACCTCAAGTTCTTTG
TCCAACAGGCTGCTTACTTTTACCGAGGTTACAGCTGCTGTCAGCTCTAG
TCGTGGTACTGAAACTTGTTTCAATGGACTGACTTGTGACTTGCCCATGA
GAAAACTGACATTGACTTCTCCTCTTTCATTCTCAAGACGAAGATAGCTG
CACTGACCATATCCCAGTGTCGAAGCATCAGAGAAGTGATGAATTGTGAC
GTCAGTGACTTCTCCAAACGAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026965XLOC_026965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043252-exon-sc0004065-1491911889:1005..1280TCONS_00043252-exon-sc0004065-1491911889:1005..1280Clytia hemisphaericaexon
TCONS_00043252-exon-sc0004065-1510915933:1005..1280TCONS_00043252-exon-sc0004065-1510915933:1005..1280Clytia hemisphaericaexon
TCONS_00043252-exon-sc0004065-1575043694:1005..1280TCONS_00043252-exon-sc0004065-1575043694:1005..1280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004065supercontigsc0004065:1005..1280 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.60715	1.52543	0.590389	0	3.51588	2.7783	8.04455	18.828	3.51519	3.26559	2.11311	8.33445	0	0	0	0	0.391435	0	0	0	0	0	0.59786	1.08708	0	1.49892	0	0	1.15749	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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