TCONS_00043251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043251
Unique NameTCONS_00043251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043251 ID=TCONS_00043251|Name=TCONS_00043251|organism=Clytia hemisphaerica|type=transcript|length=408bp
TTTGGTCCAGCGCGGTTAGCGAATGGACCTTTTAAGAGCACGGCAATGTT
AGTGCGGAACCAAGTAGTAGCCTGCAATATCGGATCAAAATAAATACATT
ATCCCGATCAAAGGCTAGTTCGCGATTTCACTGTACCCACATTGAGTAGT
GCTACGAGGGTACGAAGTCCGTCAGTTGAGAGAAATTAGTTTTTCATCAA
CAGAGTCTAAATTAAAATCTCAAATTTATGAGGCTGTAAGGACATATAAT
CTCCTTAGTGCTATCTGCTGGAGACTATAGTTTAGCCAACGCTAAATCTC
GTGTGTGGTGATGAAGCGATGAACGTGAAAAAATCAAGAAGTACAAGAAG
TTGTCTTTAGTGTTTTGCAGTTTCAGTGTTTACATGGATGCTGTATAATA
TCATCAAN
Run BLAST on NCBI

transcript from alignment at sc0004063:17467..17874

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043251 ID=TCONS_00043251|Name=TCONS_00043251|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0004063:17467..17874 (Clytia hemisphaerica)
NTTGATGATATTATACAGCATCCATGTAAACACTGAAACTGCAAAACACT
AAAGACAACTTCTTGTACTTCTTGATTTTTTCACGTTCATCGCTTCATCA
CCACACACGAGATTTAGCGTTGGCTAAACTATAGTCTCCAGCAGATAGCA
CTAAGGAGATTATATGTCCTTACAGCCTCATAAATTTGAGATTTTAATTT
AGACTCTGTTGATGAAAAACTAATTTCTCTCAACTGACGGACTTCGTACC
CTCGTAGCACTACTCAATGTGGGTACAGTGAAATCGCGAACTAGCCTTTG
ATCGGGATAATGTATTTATTTTGATCCGATATTGCAGGCTACTACTTGGT
TCCGCACTAACATTGCCGTGCTCTTAAAAGGTCCATTCGCTAACCGCGCT
GGACCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026964XLOC_026964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043251-exon-sc0004063-1491911889:17467..17874TCONS_00043251-exon-sc0004063-1491911889:17467..17874Clytia hemisphaericaexon
TCONS_00043251-exon-sc0004063-1510915933:17467..17874TCONS_00043251-exon-sc0004063-1510915933:17467..17874Clytia hemisphaericaexon
TCONS_00043251-exon-sc0004063-1575043694:17467..17874TCONS_00043251-exon-sc0004063-1575043694:17467..17874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004063supercontigsc0004063:17467..17874 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.17828	0.347702	0.486193	0	3.17743	1.01295	3.58751	2.83958	1.31417	2.45734	0.722487	1.49887	1.89865	2.64307	0.66772	0	1.0426	2.35353	0.189516	0	0.827938	0	0	0	0.382823	1.51964	1.81155	1.34202	0	0.403211
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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