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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043246 ID=TCONS_00043246|Name=TCONS_00043246|organism=Clytia hemisphaerica|type=transcript|length=1210bp
aatactggcaattacataaatggaattttgaaattcttagggacttgtgt
tgcttgatgttatctgagatttaaagcactttgaaatcttttgaggacat
caattattattttaacatttgtaaaggaaatatttatccgcatctttgcg
gctcttgtttacCTTTCATTACGATAACAGTGTCGTAAGAAAATCGCCCT
AGAAGCTTCTCTTTTAATTTGATATCCAAGGTTGTCTCCATTGATGATTT
GGTTTGTTCGTGGTTTGTGCGTGGATCAGCAATGTTGATATCTTTAAGTG
CTGTCAATGCCTCCAAAATAGGCGTAGTAAAATCAGAAACTACTTTACCC
ACTCCATTAGCAATGACAGAAAAAGACCCCGAAAAAGACCCAAACAATTT
CACAACTTCTGCAATAGACTGCGCAGTAGTCAGTAGTTGCAGCTTCTTCT
CAGCAGCCTCGCTGACCTCCTCCAAAGTTTCATGAAGAGATTCAACAGCA
CGGGTTCCATCAGCAAGTTCTTCCAATACATCTTTCACTTTAATAGAATC
TATATAAAGCACTTTGCATTCTTTGTGGAGCAAAAAATCTCATCAAATGT
ATTTGCTTTATAATATTGAAGCTTTTCTCTTCGATCTGATAAACCTTCAA
AATCTAAAGCGTTCTGCAAGCATGATTTCAATTTCTTTGTGATGGAATCT
GTGTTACCATTAGCCTCTATGGTCACATATCCTGGTTTTCCTTTAATGTC
ATTGATTTCGAAACCTTCTAGCTCTTCATCACTGAAATTCAGCACCAGAT
CCATATCTGTTTCAaactcaaaattgattttatcctcaaaatCTTCACAC
GGATAAAAGAATCTTGGAAGCATGCATCCTTCAGCTGAGCTACCTGCCAC
ATCGACTTTTTCGCTAAATTCTTTAAGATCACCATTAACATCGTATAGAT
GGTTTGCAACCATTTGGATCGCCTCTATNTGCATCCTTCAGCTGAGCTAC
CTGCCACATCGACTTTTTCGCTAAATTCTTTAAGATCACCATTAACATCG
TATAGATGGTTTGCAACCATTTGGATCGCCTCTATAATGATGCCATCCAT
TTTCATGAGtctttcaaataattttatCCGATTCatcttttccatatttt
ttgctttaatgttttgtttttctaataaaataatatattttttgttcata
atTGTAATTG Run BLAST on NCBI protein sequence of TCONS_00043246-protein >TCONS_00043246-protein ID=TCONS_00043246-protein|Name=TCONS_00043246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MXIEAIQMVANHLYDVNGDLKEFSEKVDVAGSSAEGCMLPRFFYPCEDFE
DKINFEFETDMDLVLNFSDEELEGFEINDIKGKPGYVTIEANGNTDSITK
KLKSCLQNALDFEGLSDRREKLQYYKANTFDEIFCSTKNAKCFI Run BLAST on NCBI transcript from alignment at sc0004060:7151..8360 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043246 ID=TCONS_00043246|Name=TCONS_00043246|organism=Clytia hemisphaerica|type=transcript|length=1210bp|location=Sequence derived from alignment at sc0004060:7151..8360 (Clytia hemisphaerica)
CAATTACAattatgaacaaaaaatatattattttattagaaaaacaaaac
attaaagcaaaaaatatggaaaagatGAATCGGataaaattatttgaaag
aCTCATGAAAATGGATGGCATCATTATAGAGGCGATCCAAATGGTTGCAA
ACCATCTATACGATGTTAATGGTGATCTTAAAGAATTTAGCGAAAAAGTC
GATGTGGCAGGTAGCTCAGCTGAAGGATGCANATAGAGGCGATCCAAATG
GTTGCAAACCATCTATACGATGTTAATGGTGATCTTAAAGAATTTAGCGA
AAAAGTCGATGTGGCAGGTAGCTCAGCTGAAGGATGCATGCTTCCAAGAT
TCTTTTATCCGTGTGAAGattttgaggataaaatcaattttgagttTGAA
ACAGATATGGATCTGGTGCTGAATTTCAGTGATGAAGAGCTAGAAGGTTT
CGAAATCAATGACATTAAAGGAAAACCAGGATATGTGACCATAGAGGCTA
ATGGTAACACAGATTCCATCACAAAGAAATTGAAATCATGCTTGCAGAAC
GCTTTAGATTTTGAAGGTTTATCAGATCGAAGAGAAAAGCTTCAATATTA
TAAAGCAAATACATTTGATGAGATTTTTTGCTCCACAAAGAATGCAAAGT
GCTTTATATAGATTCTATTAAAGTGAAAGATGTATTGGAAGAACTTGCTG
ATGGAACCCGTGCTGTTGAATCTCTTCATGAAACTTTGGAGGAGGTCAGC
GAGGCTGCTGAGAAGAAGCTGCAACTACTGACTACTGCGCAGTCTATTGC
AGAAGTTGTGAAATTGTTTGGGTCTTTTTCGGGGTCTTTTTCTGTCATTG
CTAATGGAGTGGGTAAAGTAGTTTCTGATTTTACTACGCCTATTTTGGAG
GCATTGACAGCACTTAAAGATATCAACATTGCTGATCCACGCACAAACCA
CGAACAAACCAAATCATCAATGGAGACAACCTTGGATATCAAATTAAAAG
AGAAGCTTCTAGGGCGATTTTCTTACGACACTGTTATCGTAATGAAAGgt
aaacaagagccgcaaagatgcggataaatatttcctttacaaatgttaaa
ataataattgatgtcctcaaaagatttcaaagtgctttaaatctcagata
acatcaagcaacacaagtccctaagaatttcaaaattccatttatgtaat
tgccagtatt Coding sequence (CDS) from alignment at sc0004060:7151..8360 >TCONS_00043246 ID=TCONS_00043246|Name=TCONS_00043246|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0004060:7151..8360 (Clytia hemisphaerica)
ATGCANATAGAGGCGATCCAAATGGTTGCAAACCATCTATACGATGTTAA
TGGTGATCTTAAAGAATTTAGCGAAAAAGTCGATGTGGCAGGTAGCTCAG
CTGAAGGATGCATGCTTCCAAGATTCTTTTATCCGTGTGAAGattttgag
gataaaatcaattttgagttTGAAACAGATATGGATCTGGTGCTGAATTT
CAGTGATGAAGAGCTAGAAGGTTTCGAAATCAATGACATTAAAGGAAAAC
CAGGATATGTGACCATAGAGGCTAATGGTAACACAGATTCCATCACAAAG
AAATTGAAATCATGCTTGCAGAACGCTTTAGATTTTGAAGGTTTATCAGA
TCGAAGAGAAAAGCTTCAATATTATAAAGCAAATACATTTGATGAGATTT
TTTGCTCCACAAAGAATGCAAAGTGCTTTATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043246-exon-sc0004060-1491911889:7151..8360 | TCONS_00043246-exon-sc0004060-1491911889:7151..8360 | Clytia hemisphaerica | exon |
| TCONS_00043246-exon-sc0004060-1510915933:7151..8360 | TCONS_00043246-exon-sc0004060-1510915933:7151..8360 | Clytia hemisphaerica | exon |
| TCONS_00043246-exon-sc0004060-1575043694:7151..8360 | TCONS_00043246-exon-sc0004060-1575043694:7151..8360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004060 | supercontig | sc0004060:7151..8360 . |
Blast
The following BLAST results are available for this feature:
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