TCONS_00043231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043231
Unique NameTCONS_00043231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043231 ID=TCONS_00043231|Name=TCONS_00043231|organism=Clytia hemisphaerica|type=transcript|length=872bp
NTTTAATGGGTTCATTAGATAACAGTATcctactacacgtttttttacaa
ggacaaactatataagaacacaaggcttcgtttactaaaatgttaagaac
aagttaaagaaCATTTTGTGGCTTCGCggactttaaaacacccaatttct
taggtaaatggacaaaaatactcgaagaaaaaaaaacgaagataagaaca
tgttaagaacatttttaggcttaaaactcaaaaagttaacattccaaggc
ttcaaaattttggatgttcttataaaaaacacgtgtACTAAAGATGCCAT
GATAACTGAACGCtgtacattttcttcttttcagtgACGACGGGAGTTTT
TCAACGAACACAGACAAATTGAGACAGTTCGGTCAAAAGTCAATCCACTT
GAAACACGATAAAGATCTAGCGAAAGCTGTTCTCCAATTATTTGAAACAG
AAAAAGGGTAAGAAAAGAATATCTTATCATTATTTCAGTCTTAAGGtcat
ttcacggtcgaaatgaAATTTAGGTAATCATGGTTACGCTCTAATACCAA
CTACTCGTTGTTCAGAAACAGAATCTTGAAAACCTTTGACTAATAGAAGG
ATGGAATTGGTCCTGATTTCCCATAGTTCATTGCGACAGTGAAATGAATT
GAACTGAAGCCGATATGTTGGTAGCCTGTTaaacgaaaaccgcttttttc
taTCGCgttttaaaacaaagaaaacatttgGTTTGTGGAAAGGTACTGGC
TAATGTGTTGGAGAAACCTTAATTATCTATGAATGATCTCATAGAAATCT
TAGATACATACTATGTATCTAAAAGTCGTGCGTGCGATTAGACTAGCGCG
ATTTATGAACACAACATGATAG
Run BLAST on NCBI

transcript from alignment at sc0004040:5232..6103

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043231 ID=TCONS_00043231|Name=TCONS_00043231|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at sc0004040:5232..6103 (Clytia hemisphaerica)
CTATCATGTTGTGTTCATAAATCGCGCTAGTCTAATCGCACGCACGACTT
TTAGATACATAGTATGTATCTAAGATTTCTATGAGATCATTCATAGATAA
TTAAGGTTTCTCCAACACATTAGCCAGTACCTTTCCACAAACcaaatgtt
ttctttgttttaaaacGCGAtagaaaaaagcggttttcgtttAACAGGCT
ACCAACATATCGGCTTCAGTTCAATTCATTTCACTGTCGCAATGAACTAT
GGGAAATCAGGACCAATTCCATCCTTCTATTAGTCAAAGGTTTTCAAGAT
TCTGTTTCTGAACAACGAGTAGTTGGTATTAGAGCGTAACCATGATTACC
TAAATTtcatttcgaccgtgaaatgaCCTTAAGACTGAAATAATGATAAG
ATATTCTTTTCTTACCCTTTTTCTGTTTCAAATAATTGGAGAACAGCTTT
CGCTAGATCTTTATCGTGTTTCAAGTGGATTGACTTTTGACCGAACTGTC
TCAATTTGTCTGTGTTCGTTGAAAAACTCCCGTCGTcactgaaaagaaga
aaatgtacaGCGTTCAGTTATCATGGCATCTTTAGTacacgtgtttttta
taagaacatccaaaattttgaagccttggaatgttaactttttgagtttt
aagcctaaaaatgttcttaacatgttcttatcttcgtttttttttcttcg
agtatttttgtccatttacctaagaaattgggtgttttaaagtccGCGAA
GCCACAAAATGttctttaacttgttcttaacattttagtaaacgaagcct
tgtgttcttatatagtttgtccttgtaaaaaaacgtgtagtaggATACTG
TTATCTAATGAACCCATTAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026947XLOC_026947Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043231-exon-sc0004040-1491911889:5232..6103TCONS_00043231-exon-sc0004040-1491911889:5232..6103Clytia hemisphaericaexon
TCONS_00043231-exon-sc0004040-1510915933:5232..6103TCONS_00043231-exon-sc0004040-1510915933:5232..6103Clytia hemisphaericaexon
TCONS_00043231-exon-sc0004040-1575043694:5232..6103TCONS_00043231-exon-sc0004040-1575043694:5232..6103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004040supercontigsc0004040:5232..6103 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23495	1.04638	0.352338	0.833516	3.89714	2.62371	5.78181	6.77389	3.52005	3.35416	5.1503	3.02972	5.28879	5.86751	2.25817	3.43933	8.84171	8.22204	6.60756	4.95775	6.73508	7.41706	4.69274	4.97665	8.51329	7.22975	8.36574	8.75319	3.72972	4.62975
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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