TCONS_00043227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043227
Unique NameTCONS_00043227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043227 ID=TCONS_00043227|Name=TCONS_00043227|organism=Clytia hemisphaerica|type=transcript|length=395bp
GTGTCGTCTGGGAAAGTACTTTTTAATTAACTTAACTAAAGTGTGTTTTA
TACACTATCTTATTTTGTGTCTTTCGGGAAAGtactttttaattaatttt
ctaCTGAAGTGTGTCACTTCCCTATTTGTGTCGTCTGGGAAAGtactttt
taattaaattttatgTTACTTAAGAACCTTTTTCTATCATTGTTGCCATG
TCGACTAGCAAAAAAAGAGTTCCTACTTCTCCTTTAGAAGATACTGCTAG
AAGCATTGATGTCCTTAAGGAAGATTTtaccaaaagaaaaaagttgaaag
ttcATTTTCTTGACCAACCATCTACTTCCTCTCCAAAAAAGAACAATATC
CAGTCTGAATCTGAACCAATCTATAATGAGGATGGTGTTGAATTG
Run BLAST on NCBI

transcript from alignment at sc0004030:3100..3494

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043227 ID=TCONS_00043227|Name=TCONS_00043227|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at sc0004030:3100..3494 (Clytia hemisphaerica)
CAATTCAACACCATCCTCATTATAGATTGGTTCAGATTCAGACTGGATAT
TGTTCTTTTTTGGAGAGGAAGTAGATGGTTGGTCAAGAAAATgaactttc
aacttttttcttttggtaAAATCTTCCTTAAGGACATCAATGCTTCTAGC
AGTATCTTCTAAAGGAGAAGTAGGAACTCTTTTTTTGCTAGTCGACATGG
CAACAATGATAGAAAAAGGTTCTTAAGTAAcataaaatttaattaaaaag
taCTTTCCCAGACGACACAAATAGGGAAGTGACACACTTCAGtagaaaat
taattaaaaagtaCTTTCCCGAAAGACACAAAATAAGATAGTGTATAAAA
CACACTTTAGTTAAGTTAATTAAAAAGTACTTTCCCAGACGACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026944XLOC_026944Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043227-exon-sc0004030-1491911889:3100..3494TCONS_00043227-exon-sc0004030-1491911889:3100..3494Clytia hemisphaericaexon
TCONS_00043227-exon-sc0004030-1510915933:3100..3494TCONS_00043227-exon-sc0004030-1510915933:3100..3494Clytia hemisphaericaexon
TCONS_00043227-exon-sc0004030-1575043694:3100..3494TCONS_00043227-exon-sc0004030-1575043694:3100..3494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004030supercontigsc0004030:3100..3494 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.257224	0	0	0	0.976405	0.292596	0.312707	0.381096	0.253711	0.171029	0.541544	0.821556	0.323145	0.625914	2.27236	0.910466	3.01625	4.01888	3.74817	4.97196	2.47584	2.01047	7.35618	7.26333	0	0.431392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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