TCONS_00043225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043225
Unique NameTCONS_00043225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043225 ID=TCONS_00043225|Name=TCONS_00043225|organism=Clytia hemisphaerica|type=transcript|length=599bp
AATACAAATGATGATACATCAAAGTCTGAACCTGAGTGTGGACAAGCACC
ATTAGCATTAGTCCCTTATGTGTCAGTGACGAACATTGAAGAACCAAATT
CAAAGGCTGAAGATGAACAAATTGGTTTGTATTTCCAACTAGACCTTTTT
TTCGTTGTAGGCAAATTTTGACTTATCATCTTATACAGTAAAGCTATTGG
TAGGAGGCAAGTAAGAGGcaattgaagaaaaatttgtgattattttttaa
acGTCACTTTTTGTTTAAGAAGTGTCACAGTTTGAGTAACAAGCTTTCAC
TTTTTCATTCAGCAACATTCATCCGGAGACAAAAGTATTCAACGTCAACA
TTAATTTCAAAAGTAGTGCTTCAAGTCAATTTGAAAAGTTAGTCACAAGA
ATCGAAGTGCAGCTTACAAATGAATGGACAAGTGCAAAAGAAGAGttaaa
aaatcttgagaaaaaggCAATGTCAGAAGATAAGGAAGAGATAGCAGTGG
TTCCAAAAGATGANATAAATGGACAAGTGCAAAAGAAGAGttaaaaaatc
ttgagaaaaaggCAATGTCAGAAGATAAGGAAGAGATAGCAGTGGTTCC
Run BLAST on NCBI

transcript from alignment at sc0004030:7343..8071+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043225 ID=TCONS_00043225|Name=TCONS_00043225|organism=Clytia hemisphaerica|type=transcript|length=729bp|location=Sequence derived from alignment at sc0004030:7343..8071+ (Clytia hemisphaerica)
AATACAAATGATGATACATCAAAGTCTGAACCTGAGTGTGGACAAGCACC
ATTAGCATTAGGTTTGTATATACATTAATTTTCATATATTTGAGTGTCTA
CCACAACATATATTGAaaattggttaaaataaacAAGACAATAATAGgat
ttggtcaaaaaattgtataggtttgttttttttcattgtagTCCCTTATG
TGTCAGTGACGAACATTGAAGAACCAAATTCAAAGGCTGAAGATGAACAA
ATTGGTTTGTATTTCCAACTAGACCTTTTTTTCGTTGTAGGCAAATTTTG
ACTTATCATCTTATACAGTAAAGCTATTGGTAGGAGGCAAGTAAGAGGca
attgaagaaaaatttgtgattattttttaaacGTCACTTTTTGTTTAAGA
AGTGTCACAGTTTGAGTAACAAGCTTTCACTTTTTCATTCAGCAACATTC
ATCCGGAGACAAAAGTATTCAACGTCAACATTAATTTCAAAAGTAGTGCT
TCAAGTCAATTTGAAAAGTTAGTCACAAGAATCGAAGTGCAGCTTACAAA
TGAATGGACAAGTGCAAAAGAAGAGttaaaaaatcttgagaaaaaggCAA
TGTCAGAAGATAAGGAAGAGATAGCAGTGGTTCCAAAAGATGANATAAAT
GGACAAGTGCAAAAGAAGAGttaaaaaatcttgagaaaaaggCAATGTCA
GAAGATAAGGAAGAGATAGCAGTGGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026942XLOC_026942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043225-exon-sc0004030-1491911889:7343..7403TCONS_00043225-exon-sc0004030-1491911889:7343..7403Clytia hemisphaericaexon
TCONS_00043225-exon-sc0004030-1510915933:7343..7403TCONS_00043225-exon-sc0004030-1510915933:7343..7403Clytia hemisphaericaexon
TCONS_00043225-exon-sc0004030-1575043694:7343..7403TCONS_00043225-exon-sc0004030-1575043694:7343..7403Clytia hemisphaericaexon
TCONS_00043225-exon-sc0004030-1491911889:7534..8071TCONS_00043225-exon-sc0004030-1491911889:7534..8071Clytia hemisphaericaexon
TCONS_00043225-exon-sc0004030-1510915933:7534..8071TCONS_00043225-exon-sc0004030-1510915933:7534..8071Clytia hemisphaericaexon
TCONS_00043225-exon-sc0004030-1575043694:7534..8071TCONS_00043225-exon-sc0004030-1575043694:7534..8071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004030supercontigsc0004030:7343..8071 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.109491	0.153315	0.189905	0	0	0.181501	0.188491	0.051655	0	0	0	0	0	0	0	0	0.0948264	1.00206	2.08992	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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