TCONS_00043223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043223
Unique NameTCONS_00043223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043223 ID=TCONS_00043223|Name=TCONS_00043223|organism=Clytia hemisphaerica|type=transcript|length=684bp
AGCTCAGGAATTCAAAATGAGTTAGCAGCCTTAACTCTGAACTGATTATA
CAGGACaaaactcttcacataaaaatttagaaacattttGTCATTGTGTA
TCAACTGCAGCGCATAAATTTACagcaaaatcataaaaaatagtatatat
ttttgacaattttcaagaTCTGTCAATGTCACTGGtgcagagagagagag
agctgCAGAAAGTCATTTCCATGCCCAGCAACATTCATTAAATTCTTCAG
AATCGAATACAATCACGTTTCACTTTACTTTCAATCATATGTCAATTaac
tttccaccattttattcctggaaaattttcaaacaagcgATCAGAGACCA
CATACaacagccaataaaaacaataacaaacaaacagttcttctttcCAC
TGGAATAAGTGAggataaattcttccaggtttcAAGCCATAACCAAAAGA
TATCCGTTGCCATCCCAAAGCATACCAAAAGTCCAAACCAAATTCGTATT
CGATCATCATCTATTATTAGCTAGGATCCAATTCTAAGAaatgatttgat
aattttcattcaCCATGTTTACAGTTAATCTCTGAGATTCTTCAATCCTG
TTATGGAAATAACCCAACAACTCTGCTGTTGTTGatgcaataataaaatt
tccatcttctttctcctCCTTCCACAGATTCAGC
Run BLAST on NCBI

transcript from alignment at sc0004029:6654..7337

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043223 ID=TCONS_00043223|Name=TCONS_00043223|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at sc0004029:6654..7337 (Clytia hemisphaerica)
GCTGAATCTGTGGAAGGaggagaaagaagatggaaattttattattgcat
CAACAACAGCAGAGTTGTTGGGTTATTTCCATAACAGGATTGAAGAATCT
CAGAGATTAACTGTAAACATGGtgaatgaaaattatcaaatcattTCTTA
GAATTGGATCCTAGCTAATAATAGATGATGATCGAATACGAATTTGGTTT
GGACTTTTGGTATGCTTTGGGATGGCAACGGATATCTTTTGGTTATGGCT
TgaaacctggaagaatttatccTCACTTATTCCAGTGgaaagaagaactg
tttgtttgttattgtttttattggctgttGTATGTGGTCTCTGATcgctt
gtttgaaaattttccaggaataaaatggtggaaagttAATTGACATATGA
TTGAAAGTAAAGTGAAACGTGATTGTATTCGATTCTGAAGAATTTAATGA
ATGTTGCTGGGCATGGAAATGACTTTCTGcagctctctctctctctgcaC
CAGTGACATTGACAGAtcttgaaaattgtcaaaaatatatactatttttt
atgattttgctGTAAATTTATGCGCTGCAGTTGATACACAATGACaaaat
gtttctaaatttttatgtgaagagttttGTCCTGTATAATCAGTTCAGAG
TTAAGGCTGCTAACTCATTTTGAATTCCTGAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026940XLOC_026940Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043223-exon-sc0004029-1491911889:6654..7337TCONS_00043223-exon-sc0004029-1491911889:6654..7337Clytia hemisphaericaexon
TCONS_00043223-exon-sc0004029-1510915933:6654..7337TCONS_00043223-exon-sc0004029-1510915933:6654..7337Clytia hemisphaericaexon
TCONS_00043223-exon-sc0004029-1575043694:6654..7337TCONS_00043223-exon-sc0004029-1575043694:6654..7337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004029supercontigsc0004029:6654..7337 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.497951	0.949855	0.432627	0.330946	3.06119	2.38647	2.17542	1.09333	0.286051	0.882377	1.33422	0.685597	0.450622	0	0.0675047	0.755327	0.413081	0.797729	0.409412	0.319034	0.387399	0.713828	0	0.962718	1.11245	1.30968	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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