TCONS_00043213 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00043213
Unique Name	TCONS_00043213
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	889

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0004017:701..2399+
coding sequence from alignment at sc0004017:701..2399+

transcript sequence

>TCONS_00043213 ID=TCONS_00043213|Name=TCONS_00043213|organism=Clytia hemisphaerica|type=transcript|length=889bp
ttaagccaACGAATTGAGATCATGGTTGCTGTATTACTCATTACCATGTA
TGGAATGTATCTTACCAGAAATTTACTGGAATCATTTTGCACTCCTCGTT
GAAGCAACACATATTTTATTGGCAGACAAGATCAGTAAAGATGATCTATC
TTGGGCTGAATCATGTTTGGATTTGTTTTATAAATACTTTGAAGAGTTAT
ATGCTAAAACTAAATGTGGGTTAAATGTACATAACTGCAACCACCTTTGT
CAATCTGTCCGAAACTGGGGTCCATTGTGGGCATGGTTTTGCTTTGGttt
cgaaaatttgaatggTAGAATTATAAAACAAGTACATGGTACAAGGAATG
CTTGTTCTCAGGTATTTAAAGCTTTCAGTGGACTCGAGACTATTCACTGC
ATGATGAGTGATggaagaacaaaagaaattgtcaaaGAGGGTTTGACTTC
CATGATAATCAACAAACAAAGtggTGGTATGAATAATTGGAAGGTGGTAA
ATGATGCAATCTCATTAGGAGGAAAAAGCGATACATTCATAGCATCTGAA
GAATTGAAAGGTCAAGTACAACTCTACAATATATCTGACAGCGCTGAAAA
ATATTACAAGATTCGTAAGAACAAGGTCACCTATTCAAGTGTAGAGTACA
AACACGCAACCAAAACTATCAACTATGTCGCAGAGCTTTCAATTAATGAG
TCAAAACTATTTGTTGAGATACAATACTTTCTATGTGATCAGGGTCGTGT
TTATCTTTGTGGAAAGGAGATTCCACGGAAAGAAAATTGGTGTATTTTGA
AGGAGTGGCACAGAAGCAAACTTATTCGAGTTGACAGAGAAATAAGGTTT
GTATtagttaagaaaataaaataaattaagcATCCACAG

Run BLAST on NCBI

protein sequence of TCONS_00043213-protein

>TCONS_00043213-protein ID=TCONS_00043213-protein|Name=TCONS_00043213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MECILPEIYWNHFALLVEATHILLADKISKDDLSWAESCLDLFYKYFEEL
YAKTKCGLNVHNCNHLCQSVRNWGPLWAWFCFGFENLNGRIIKQVHGTRN
ACSQVFKAFSGLETIHCMMSDGRTKEIVKEGLTSMIINKQSGGMNNWKVV
NDAISLGGKSDTFIASEELKGQVQLYNISDSAEKYYKIRKNKVTYSSVEY
KHATKTINYVAELSINESKLFVEIQYFLCDQGRVYLCGKEIPRKENWCIL
KEWHRSKLIRVDREIRFVLVKKIK

Run BLAST on NCBI

transcript from alignment at sc0004017:701..2399+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00043213 ID=TCONS_00043213|Name=TCONS_00043213|organism=Clytia hemisphaerica|type=transcript|length=1699bp|location=Sequence derived from alignment at sc0004017:701..2399+ (Clytia hemisphaerica)
ttaagccaACGAATTGAGATCATGGTTGCTGTATTACTCATTACCATGTA
TGGAATGTATCTTACCAGAAATTTACTGGAATCATTTTGCACTCCTCGTT
GAAGCAACACATATTTTATTGGCAGACAAGATCAGTAAAGATGATCTATC
TTGGGCTGAATCATGTTTGGATTTGTTTTATAAATACTTTGAAGAGTTAT
ATGGTGAGTTACATTATATTCTAGTTGGTATTAGAtaccttttaagaaaa
tatgaaaaaccaAATATCTGCACAATTTCAAATAAATCAGAATAGATAGT
TGGTGAGTTAAGCTAGGTGAAAATTAATGTTGGTGAAAGGCATAAAGTTG
CATTAGAGTTGCATAGAGTTTTAGTATTTTGTTCAACTCTNACACAATTT
CAAATAAATCAGAATATATAGTTGCTGAGTTAAACTAGGTGAAAATTAAT
GTTGGTAAAAGGCATAAAGTTGCATTAGAGTTGCATAGAGTTTTAGTATT
TTGTTCAACTCTTAGTAATATCATAATGCTCTGTAAAGATTTCTTGTGTG
AAACAGTTGACCAGTGGTTTTATTGAATTTTCCAGCTAAAACTAAATGTG
GGTTAAATGTACATAACTGCAACCACCTTTGTCAATCTGTCCGAAACTGG
GGTCCATTGTGGGCATGGTTTTGCTTTGGtttcgaaaatttgaatggTAG
AATTATAAAACAAGTACATGGTACAAGGAATGCTTGTTCTCAGGTAAATA
TCTTCTCTGGATTAGAAATCTCATTCTTCGAATAAAATAGGGTGAATGGA
AACAAATGGCAATTCATCTCAGAAAACACAACTTTggcagaaagaaattt
tggagaATTTGTTGTTTGAAATATTGCCTgtattcgccaaaatttcttcc
caaaTATAATGTTTTTACGCTACAGTCTCCATTAAGATTCATTTGAATAG
AATATTTATGGCCAGATACTTTTTTAGGTATTTAAAGCTTTCAGTGGACT
CGAGACTATTCACTGCATGATGAGTGATggaagaacaaaagaaattgtca
aaGAGGGTTTGACTTCCATGATAATCAACAAACAAAGGttttaaaaaatc
tcatttcAGGTTTTTCCCAACCTTATTGTAAGATTGTACCTTTTGTCGTA
ATGGTTAAGCACCTTTGGATGGATctaaaaaaggttttattttattcttt
gcGACCATAAGAGAGAGATTTCTtatatattcttttttattaaaaaagtc
cAAATACCAACatccaaattaattttttcagtggTGGTATGAATAATTGG
AAGGTGGTAAATGATGCAATCTCATTAGGAGGAAAAAGCGATACATTCAT
AGCATCTGAAGAATTGAAAGGTCAAGTACAACTCTACAATATATCTGACA
GCGCTGAAAAATATTACAAGATTCGTAAGAACAAGGTCACCTATTCAAGT
GTAGAGTACAAACACGCAACCAAAACTATCAACTATGTCGCAGAGCTTTC
AATTAATGAGTCAAAACTATTTGTTGAGATACAATACTTTCTATGTGATC
AGGGTCGTGTTTATCTTTGTGGAAAGGAGATTCCACGGAAAGAAAATTGG
TGTATTTTGAAGGAGTGGCACAGAAGCAAACTTATTCGAGTTGACAGAGA
AATAAGGTTTGTATtagttaagaaaataaaataaattaagcATCCACAG

Coding sequence (CDS) from alignment at sc0004017:701..2399+

>TCONS_00043213 ID=TCONS_00043213|Name=TCONS_00043213|organism=Clytia hemisphaerica|type=CDS|length=3300bp|location=Sequence derived from alignment at sc0004017:701..2399+ (Clytia hemisphaerica)
ATGGAATGTATCTTACCAGAAATTTACTGGAATCATTTTGCACTCCTCGT
TGAAGCAACACATATTTTATTGGCAGACAAGATCAGTAAAGATGATCTAT
CTTGGGCTGAATCATGTTTGGATTTGTTTTATAAATACTTTGAAGAGTTA
TATGCTAAAACTAAATGTGGGTTAAATGTACATAACTGCAACCACCTTTG
TCAATCTGTCCGAAACTGGGGTCCATTGTGGGCATGGTTTTGCTTTGGtt
tcgaaaatttgaatggTAGAATTATAAAACAAGTACATGGTACAAGGAAT
GCTTGTTCTCAGGTATTTAAAGCTTTCAGTGGACTCGAGACTATTCACTG
CATGATGAGTGATggaagaacaaaagaaattgtcaaaGAGGGTTTGACTT
CCATGATAATCAACAAACAAAGtggTGGTATGAATAATTGGAAGGTGGTA
AATGATGCAATCTCATTAGGAGGAAAAAGCGATACATTCATAGCATCTGA
AGAATTGAAAGGTCAAGTACAACTCTACAATATATCTGACAGCGCTGAAA
AATATTACAAGATTCGTAAGAACAAGGTCACCTATTCAAGTGTAGAGTAC
AAACACGCAACCAAAACTATCAACTATGTCGCAGAGCTTTCAATTAATGA
GTCAAAACTATTTGTTGAGATACAATACTTTCTATGTGATCAGGGTCGTG
TTTATCTTTGTGGAAAGGAGATTCCACGGAAAGAAAATTGGTGTATTTTG
AAGGAGTGGCACAGAAGCAAACTTATTCGAGTTGACAGAGAAATAAGGTT
TGTATtagttaagaaaataaaataaATGGAATGTATCTTACCAGAAATTT
ACTGGAATCATTTTGCACTCCTCGTTGAAGCAACACATATTTTATTGGCA
GACAAGATCAGTAAAGATGATCTATCTTGGGCTGAATCATGTTTGGATTT
GTTTTATAAATACTTTGAAGAGTTATATGCTAAAACTAAATGTGGGTTAA
ATGTACATAACTGCAACCACCTTTGTCAATCTGTCCGAAACTGGGGTCCA
TTGTGGGCATGGTTTTGCTTTGGtttcgaaaatttgaatggTAGAATTAT
AAAACAAGTACATGGTACAAGGAATGCTTGTTCTCAGGTATTTAAAGCTT
TCAGTGGACTCGAGACTATTCACTGCATGATGAGTGATggaagaacaaaa
gaaattgtcaaaGAGGGTTTGACTTCCATGATAATCAACAAACAAAGtgg
TGGTATGAATAATTGGAAGGTGGTAAATGATGCAATCTCATTAGGAGGAA
AAAGCGATACATTCATAGCATCTGAAGAATTGAAAGGTCAAGTACAACTC
TACAATATATCTGACAGCGCTGAAAAATATTACAAGATTCGTAAGAACAA
GGTCACCTATTCAAGTGTAGAGTACAAACACGCAACCAAAACTATCAACT
ATGTCGCAGAGCTTTCAATTAATGAGTCAAAACTATTTGTTGAGATACAA
TACTTTCTATGTGATCAGGGTCGTGTTTATCTTTGTGGAAAGGAGATTCC
ACGGAAAGAAAATTGGTGTATTTTGAAGGAGTGGCACAGAAGCAAACTTA
TTCGAGTTGACAGAGAAATAAGGTTTGTATtagttaagaaaataaaataa
ATGGAATGTATCTTACCAGAAATTTACTGGAATCATTTTGCACTCCTCGT
TGAAGCAACACATATTTTATTGGCAGACAAGATCAGTAAAGATGATCTAT
CTTGGGCTGAATCATGTTTGGATTTGTTTTATAAATACTTTGAAGAGTTA
TATGCTAAAACTAAATGTGGGTTAAATGTACATAACTGCAACCACCTTTG
TCAATCTGTCCGAAACTGGGGTCCATTGTGGGCATGGTTTTGCTTTGGtt
tcgaaaatttgaatggTAGAATTATAAAACAAGTACATGGTACAAGGAAT
GCTTGTTCTCAGGTATTTAAAGCTTTCAGTGGACTCGAGACTATTCACTG
CATGATGAGTGATggaagaacaaaagaaattgtcaaaGAGGGTTTGACTT
CCATGATAATCAACAAACAAAGtggTGGTATGAATAATTGGAAGGTGGTA
AATGATGCAATCTCATTAGGAGGAAAAAGCGATACATTCATAGCATCTGA
AGAATTGAAAGGTCAAGTACAACTCTACAATATATCTGACAGCGCTGAAA
AATATTACAAGATTCGTAAGAACAAGGTCACCTATTCAAGTGTAGAGTAC
AAACACGCAACCAAAACTATCAACTATGTCGCAGAGCTTTCAATTAATGA
GTCAAAACTATTTGTTGAGATACAATACTTTCTATGTGATCAGGGTCGTG
TTTATCTTTGTGGAAAGGAGATTCCACGGAAAGAAAATTGGTGTATTTTG
AAGGAGTGGCACAGAAGCAAACTTATTCGAGTTGACAGAGAAATAAGGTT
TGTATtagttaagaaaataaaataaATGGAATGTATCTTACCAGAAATTT
ACTGGAATCATTTTGCACTCCTCGTTGAAGCAACACATATTTTATTGGCA
GACAAGATCAGTAAAGATGATCTATCTTGGGCTGAATCATGTTTGGATTT
GTTTTATAAATACTTTGAAGAGTTATATGCTAAAACTAAATGTGGGTTAA
ATGTACATAACTGCAACCACCTTTGTCAATCTGTCCGAAACTGGGGTCCA
TTGTGGGCATGGTTTTGCTTTGGtttcgaaaatttgaatggTAGAATTAT
AAAACAAGTACATGGTACAAGGAATGCTTGTTCTCAGGTATTTAAAGCTT
TCAGTGGACTCGAGACTATTCACTGCATGATGAGTGATggaagaacaaaa
gaaattgtcaaaGAGGGTTTGACTTCCATGATAATCAACAAACAAAGtgg
TGGTATGAATAATTGGAAGGTGGTAAATGATGCAATCTCATTAGGAGGAA
AAAGCGATACATTCATAGCATCTGAAGAATTGAAAGGTCAAGTACAACTC
TACAATATATCTGACAGCGCTGAAAAATATTACAAGATTCGTAAGAACAA
GGTCACCTATTCAAGTGTAGAGTACAAACACGCAACCAAAACTATCAACT
ATGTCGCAGAGCTTTCAATTAATGAGTCAAAACTATTTGTTGAGATACAA
TACTTTCTATGTGATCAGGGTCGTGTTTATCTTTGTGGAAAGGAGATTCC
ACGGAAAGAAAATTGGTGTATTTTGAAGGAGTGGCACAGAAGCAAACTTA
TTCGAGTTGACAGAGAAATAAGGTTTGTATtagttaagaaaataaaataa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026930	XLOC_026930	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00043213-exon-sc0004017-1491911889:701..903	TCONS_00043213-exon-sc0004017-1491911889:701..903	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1510915933:701..903	TCONS_00043213-exon-sc0004017-1510915933:701..903	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1575043694:701..903	TCONS_00043213-exon-sc0004017-1575043694:701..903	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1491911889:1286..1443	TCONS_00043213-exon-sc0004017-1491911889:1286..1443	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1510915933:1286..1443	TCONS_00043213-exon-sc0004017-1510915933:1286..1443	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1575043694:1286..1443	TCONS_00043213-exon-sc0004017-1575043694:1286..1443	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1491911889:1678..1787	TCONS_00043213-exon-sc0004017-1491911889:1678..1787	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1510915933:1678..1787	TCONS_00043213-exon-sc0004017-1510915933:1678..1787	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1575043694:1678..1787	TCONS_00043213-exon-sc0004017-1575043694:1678..1787	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1491911889:1982..2399	TCONS_00043213-exon-sc0004017-1491911889:1982..2399	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1510915933:1982..2399	TCONS_00043213-exon-sc0004017-1510915933:1982..2399	Clytia hemisphaerica	exon
TCONS_00043213-exon-sc0004017-1575043694:1982..2399	TCONS_00043213-exon-sc0004017-1575043694:1982..2399	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00043213-protein	TCONS_00043213-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0004017	supercontig	sc0004017:701..2399 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126359	0	0	0	1.12319	1.12234	1.29513	1.79852	0.443685	0.673079	0.699143	0.460415	1.19803	1.75755	0.205234	0.239732	0.0783324	0.20072	0.221845	0	0	0.0738144	0.0818472	0.217543	0.413543	1.23366	0.0715397	0	0.115816	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00043213 vs. Swiss-Prot (Human)

BLAST of TCONS_00043213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00043213 (transcript) - C. hemisphaerica