TCONS_00043211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043211
Unique NameTCONS_00043211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043211 ID=TCONS_00043211|Name=TCONS_00043211|organism=Clytia hemisphaerica|type=transcript|length=875bp
CCCAAACTTTATTTCAcaaactaaattttgaaaatccgatttttaagGGC
CGGAAACGACGTTTCACAAACTTGTGATCTGCTAATTTTTTCCTGTGGCA
TTGATgtaagtaaccattcaaatagtatttattagACATATTTTGAGCTT
TGTTTGGAAATATTTCGCGGGTCAGGCTGTTCCAAATTTctattgggact
taatttcgcggattttcgcggatgatacccaaatccgcgaaatccgcgaa
atttaatccccgcgaaagtttatcccataaAATTTCCGTTTAAAGAATTA
TAACAGCTTAATTTCATCTATGGCATATTTAAGATAATATTAAATACACA
GAGCGGGATCATTCATTTTACTGAACtttccaaataaataaattgtGAAT
ATGCAgtaaattattaaaaatctCAAGTCGGGTTTCAGGAGACGGATAAC
TCTAGACAATTCAAAGGTTTGGCAACATTTTCATGTTGTCCATAACACTG
CCGCTCAACATCGTAAAGTCTTAACAATATTTTCAGGGAAAAATCCATTA
AAAATATAGACCCAACTTGAGATTGAGTTCAGTAAAAAATGAGAATGATC
CTATTACTCTTGAATTCATCTATCTACGTGAATGAaaactaatttcaaaa
taacaaataaaaaataaacaaaactgaCCAGAATTGGCGGCaaggacttt
gtgtaaggatacatatagacgacgtatattacattatattatatattaca
tgataagaatacaaatagacgacgtatattacaatacaattattatgtat
tacatgacaccttgctcccgatcccattcttgctcccgttcccattcttg
ctcccgttcccattcttgctcccgt
Run BLAST on NCBI

transcript from alignment at sc0004016:6500..7374

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043211 ID=TCONS_00043211|Name=TCONS_00043211|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at sc0004016:6500..7374 (Clytia hemisphaerica)
acgggagcaagaatgggaacgggagcaagaatgggaacgggagcaagaat
gggatcgggagcaaggtgtcatgtaatacataataattgtattgtaatat
acgtcgtctatttgtattcttatcatgtaatatataatataatgtaatat
acgtcgtctatatgtatccttacacaaagtccttGCCGCCAATTCTGGtc
agttttgtttattttttatttgttattttgaaattagtttTCATTCACGT
AGATAGATGAATTCAAGAGTAATAGGATCATTCTCATTTTTTACTGAACT
CAATCTCAAGTTGGGTCTATATTTTTAATGGATTTTTCCCTGAAAATATT
GTTAAGACTTTACGATGTTGAGCGGCAGTGTTATGGACAACATGAAAATG
TTGCCAAACCTTTGAATTGTCTAGAGTTATCCGTCTCCTGAAACCCGACT
TGagatttttaataatttacTGCATATTCacaatttatttatttggaaaG
TTCAGTAAAATGAATGATCCCGCTCTGTGTATTTAATATTATCTTAAATA
TGCCATAGATGAAATTAAGCTGTTATAATTCTTTAAACGGAAATTttatg
ggataaactttcgcggggattaaatttcgcggatttcgcggatttgggta
tcatccgcgaaaatccgcgaaattaagtcccaatagAAATTTGGAACAGC
CTGACCCGCGAAATATTTCCAAACAAAGCTCAAAATATGTctaataaata
ctatttgaatggttacttacATCAATGCCACAGGAAAAAATTAGCAGATC
ACAAGTTTGTGAAACGTCGTTTCCGGCCcttaaaaatcggattttcaaaa
tttagtttgTGAAATAAAGTTTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026928XLOC_026928Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043211-exon-sc0004016-1491911889:6500..7374TCONS_00043211-exon-sc0004016-1491911889:6500..7374Clytia hemisphaericaexon
TCONS_00043211-exon-sc0004016-1510915933:6500..7374TCONS_00043211-exon-sc0004016-1510915933:6500..7374Clytia hemisphaericaexon
TCONS_00043211-exon-sc0004016-1575043694:6500..7374TCONS_00043211-exon-sc0004016-1575043694:6500..7374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004016supercontigsc0004016:6500..7374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86893	1.62615	3.14695	3.94749	12.7593	7.97916	9.24641	11.1053	5.00187	3.82125	4.11864	4.9683	3.61556	4.15866	4.32616	3.79959	4.29145	3.19062	3.96204	3.79003	8.87018	10.715	2.89853	3.55791	2.97237	4.89177	5.20607	3.00607	3.82504	2.64746
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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