TCONS_00043209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043209
Unique NameTCONS_00043209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043209 ID=TCONS_00043209|Name=TCONS_00043209|organism=Clytia hemisphaerica|type=transcript|length=477bp
GATTTTtctaaatagattttttttgttGACTTGAGTGTGGGGAAAGAAAA
CAGTTGATGTATTAAGGAACATTTAAACAAGCAagGGATTATTCGAACGA
GCAAAAGAGAAAGTCGTAAAGATTTCCTACCGTAATTTTACATTTGCTTA
ATAAAGACTTATGGGACATTACTTTTTGTGCAAAGCAGCAAAATTGTGTT
CAAATGACCTGGAATGTCATTGTACGCACTATGATTTTATTATTCATATT
TCACCTTTATTACATTTGCTGCATAAGGGGCCGGTGTAGGACATTGCTAA
CAATTCGAATTTGCaaataatacacccctgtctcacagccccggtggtac
ttttttcctcagtgggaaaaaaatttcctgTCGAAATTCAAGTGGGAATA
AAaagttccaaggttaaaaactcAATTCggggtggttttggagtgcagtt
tttaaacattgattttcggatggggat
Run BLAST on NCBI

transcript from alignment at sc0004015:1997..2893-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043209 ID=TCONS_00043209|Name=TCONS_00043209|organism=Clytia hemisphaerica|type=transcript|length=897bp|location=Sequence derived from alignment at sc0004015:1997..2893- (Clytia hemisphaerica)
GATTTTTCTAAATAGATTTTTTTTGTTGACTTGAGTGTGGGGAAAGAAAA
CAGTTGATGTATTAAGGAACATTTAAACAAGCAGTAAGTGAAACTTCTAT
ATTAATCTTTAAAAAGTCTTGAAAAATTTACATTCCTTTCTAGCTAAAAT
TGAGCCAATCTGTAAGTCACAACAGACAGGGATTTCAGAATTCGCTCTTA
GAGCATTTCACAGAATATTAGTACAGTTTGGAGCGTTGTTTTTTAGTTTG
GTATATTCATTTATGCCAACATTTTCATGCTGATTTCTTAGACATTTCTG
AAATATGAGGCCGAGTTTGTTTTTTAATTATTTCTAAGGTTTTGGCTCAA
ATCAAACCTCACGTTCTAATAAAATTGCTCGGTTAAACAGATTTTATTTC
AAATTTTAATATACCCTTTTTCTAAGTTACTTAAATGTCTTGAAAATAGA
AGATATATTGATTAGGTGAGCTTTCAACTTGTATTCATATTTTTCTTCTT
TAGAGGGATTATTCGAACGAGCAAAAGAGAAAGTCGTAAAGATTTCCTAC
CGTAATTTTACATTTGCTTAATAAAGACTTATGGGACATTACTTTTTGTG
CAAAGCAGCAAAATTGTGTTCAAATGACCTGGAATGTCATTGTACGCACT
ATGATTTTATTATTCATATTTCACCTTTATTACATTTGCTGCATAAGGGG
CCGGTGTAGGACATTGCTAACAATTCGAATTTGCAAATAATACACCCCTG
TCTCACAGCCCCGGTGGTACTTTTTTCCTCAGTGGGAAAAAAATTTCCTG
TCGAAATTCAAGTGGGAATAAAAAGTTCCAAGGTTAAAAACTCAATTCGG
GGTGGTTTTGGAGTGCAGTTTTTAAACATTGATTTTCGGATGGGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026926XLOC_026926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043209-exon-sc0004015-1575043694:2811..2893TCONS_00043209-exon-sc0004015-1575043694:2811..2893Clytia hemisphaericaexon
TCONS_00043209-exon-sc0004015-1575043694:1997..2390TCONS_00043209-exon-sc0004015-1575043694:1997..2390Clytia hemisphaericaexon
TCONS_00043209-exon-sc0004015-1510915933:2811..2893TCONS_00043209-exon-sc0004015-1510915933:2811..2893Clytia hemisphaericaexon
TCONS_00043209-exon-sc0004015-1510915933:1997..2390TCONS_00043209-exon-sc0004015-1510915933:1997..2390Clytia hemisphaericaexon
TCONS_00043209-exon-sc0004015-1491911889:2811..2893TCONS_00043209-exon-sc0004015-1491911889:2811..2893Clytia hemisphaericaexon
TCONS_00043209-exon-sc0004015-1491911889:1997..2390TCONS_00043209-exon-sc0004015-1491911889:1997..2390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004015supercontigsc0004015:1997..2893 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264759	0.849404	0.167557	0.163101	0.178521	0.442119	1.55995	1.48996	1.80154	1.81223	2.57391	1.94744	0.456139	0.182864	0.150339	0.484011	0.457278	1.1822	0	0.294512	0.298746	0.561871	0.677888	0.752554	0	0.126848	0.181519	0	0.471772	0.334459
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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