TCONS_00043208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043208
Unique NameTCONS_00043208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043208 ID=TCONS_00043208|Name=TCONS_00043208|organism=Clytia hemisphaerica|type=transcript|length=478bp
catagtcaatttctcagtgggaGTGAAATTCCCGGTAGTTGttctaccgg
ggacgaaatttttgccaaatattcCCGTGGGGCTGggatcccagcgggtc
tgtgacacgggtttaataattaatgaaaattaataaaacCTTGTAAATTT
TGAGTTTATTTTAATAATATTGCTAGTAATCTTTGTTGTGATAGGATTGC
ACAACATAAAGCACTTTCTGTAAaagcaattttaaagtgctAACTTTGAA
caatatcaataattattttttaacattttttcttcTAAATCATAGCTTTA
GATTGAAGGATATCAACAGCATTGGATAACTCACTAATGATTACGACTAA
AAGGACATTGCGGAGAGGACAACAAACAAGTGAAGATAGTTTTTGTAGAA
ATAAATTTGAtctaaaatctttaattttcctGTCTGAGTTAGCCTTTCTT
TTGTTAAGAAAGTTTGTTTCTCTCGGGC
Run BLAST on NCBI

transcript from alignment at sc0004015:1378..1855-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043208 ID=TCONS_00043208|Name=TCONS_00043208|organism=Clytia hemisphaerica|type=transcript|length=478bp|location=Sequence derived from alignment at sc0004015:1378..1855- (Clytia hemisphaerica)
CATAGTCAATTTCTCAGTGGGAGTGAAATTCCCGGTAGTTGTTCTACCGG
GGACGAAATTTTTGCCAAATATTCCCGTGGGGCTGGGATCCCAGCGGGTC
TGTGACACGGGTTTAATAATTAATGAAAATTAATAAAACCTTGTAAATTT
TGAGTTTATTTTAATAATATTGCTAGTAATCTTTGTTGTGATAGGATTGC
ACAACATAAAGCACTTTCTGTAAAAGCAATTTTAAAGTGCTAACTTTGAA
CAATATCAATAATTATTTTTTAACATTTTTTCTTCTAAATCATAGCTTTA
GATTGAAGGATATCAACAGCATTGGATAACTCACTAATGATTACGACTAA
AAGGACATTGCGGAGAGGACAACAAACAAGTGAAGATAGTTTTTGTAGAA
ATAAATTTGATCTAAAATCTTTAATTTTCCTGTCTGAGTTAGCCTTTCTT
TTGTTAAGAAAGTTTGTTTCTCTCGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026926XLOC_026926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043208-exon-sc0004015-1575043694:1378..1855TCONS_00043208-exon-sc0004015-1575043694:1378..1855Clytia hemisphaericaexon
TCONS_00043208-exon-sc0004015-1510915933:1378..1855TCONS_00043208-exon-sc0004015-1510915933:1378..1855Clytia hemisphaericaexon
TCONS_00043208-exon-sc0004015-1491911889:1378..1855TCONS_00043208-exon-sc0004015-1491911889:1378..1855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004015supercontigsc0004015:1378..1855 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.643696	1.23869	0.173831	0.526305	0.731571	0.610684	0.811541	0.936034	0.585638	0.491951	2.55356	1.74481	0.350857	0.182184	0.0948793	0.173795	0	0.834427	0.140199	0	0	0.373188	0	0.240469	0	0	0	0.193002	0.181428	0.298286
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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