TCONS_00043201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043201
Unique NameTCONS_00043201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043201 ID=TCONS_00043201|Name=TCONS_00043201|organism=Clytia hemisphaerica|type=transcript|length=179bp
CGCCACTAATATATTTGCTGGTTGCACTGTCTgttgcaaaatagaaaaat
atcttCATAGTGAAAAAGGgagaaatacaaaaatatgGAGGAATGGGCCA
ACGAGGCAaaGGTAAACAGCCAATCAAAACGCATGGAAATATCACATGAG
ATGTTAAACTTAGAAGAGAGACAGTGTAT
Run BLAST on NCBI

transcript from alignment at sc0004010:4804..7597-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043201 ID=TCONS_00043201|Name=TCONS_00043201|organism=Clytia hemisphaerica|type=transcript|length=2794bp|location=Sequence derived from alignment at sc0004010:4804..7597- (Clytia hemisphaerica)
CGCCACTAATATATTTGCTGGTTGCACTGTCTGTTGCAAAATAGAAAAAT
ATCTTCATAGTGAAAAAGGGAGAAATACAAAAATATGGAGGAATGGGCCA
ACGAGGCAAAGTAAGATTTTTTAAAATTTATTCTTGAATCAGAAAATGAC
AGCGAAGAAGATATCTAGTAACTTTAGTTACTTACTGTACTGTGATAGGA
TAAATTTTCGCAGGGATTAAATTTCGCGGTGGAGCTCGTCCACGAAAATT
TAAGATTTTGCGGGGACTTAATTTCACGAATTTTTCATGAATTTGTCTTT
TTACTGGCAAATTATACATACTGGTTGTTGAAATATGCGTTATTGACGCT
TCTTTGATGCCAGTTAACTTTTTAAAAGTAGTTATTTGACATTTTTTAAG
TTTAAATTTCTATGGGGACTTAATGACACCTAAAACCGAAAAATCCGCGA
AATTTAATCACCGCGAAAATTCATCCCGTTAAAGTATGTTTAGAACAATA
TGCATTTGCAGTTGCTTTTTTGTTTGTTATTTTCTTTATAATGTAAAACT
TCCTAGAAGTACAAGAAAATCCTAACATGAAAATCCTCTAATTCAGTGCC
TCATAATTATTTCGGAAATGGTCCAACAGGTTGTACGGTCTCATAAAGTA
ATCTTTATCAGAGTAGAGAGGTAATTCAACTTTGTAGCCACCTCCACGCT
TGAAGTTGACTTCGGTCCCCGTGTGGTAGTACCCTAACGATTTTAAAGGA
AGAGCAGTCACTGCATCGTTTGCAAAACTCACTCGATAGTGAGTACGTTG
CATGTATTGGTTAACGAAATCGGCAAAAGCTTTATTGCCAGGTCGTGGGC
AACCAAAGGTTAAGAGATCGGTGTCATAGCCAGCTAGGTTGAGTTCCAAA
GCACAGTAGACGGCTTGAGCAGCGCCTAGTGAGTAGCCAGTGACGTAGAT
TTTGGACCGAGGGTATTGTGTTTTGAATTTCTTGACTTGTTCGAAAACGA
ATTGTTTTGCGGAATTGTAAGTTTCAACAAATCCTTTGTGAACTTTACAG
AGACTGAGTGCACCACATTAGGCGTATGGGATTAAATCTAATTTCCAGTT
TTGCTGCATATTTGTCATAGTCATGGTACCTGAAAAGTAAATTAAATTTA
GCTTAAAGATTATCAATTATTTTATTAAAAGATTCAAAGAAAATATTGGG
TTATAACGTTTGGGTTTTATGGTAATTTTATTGCCTTGATTGTTACAATA
TTTGAACACACATTAACCCACCACTCCGTTACTTTCAAATATTTCTTGTG
TTTTAATATGTGTACACGCCCCTAACTAAGAATAAAATACCAATCTGGAC
TTTTCTGGAATCTAGAGTTTTTTTATTCAGCTGGGGTAAAAAGCAGGGTG
GCATGGGTACATGAGGCGCTCCCAGGCCGGTACAGGACCAAAAGAATTGA
GCGATCTCATATGATGCCAGTGGCTCTTGATAGGTTAGGATATAGTTGTT
TAGCCCAGACGTCTAAACTAAACAAATTCACCAAGTATACATACCTCTGA
AAGCAACTACGATATTTCGACGTTTTGCATCATAAGCCACGTATCCATAA
GCATGTTTCCTTGTATTGAACCATTTCTTGTTTGAAGTGNAAATTCACCA
AGCATGCATACCTCTGAAAGCAACTACGATATTTCGACGTTTTGCATCAT
AAGCCACGTATCCATAAGCATGTTTCCTTGTATTGAACCATCTCTTGTTT
GAAGTATCTTGAGGTTTTTCACGATAGATATCTTTCATGTAGTTTAAAAC
CATTCGGAAGTCATCAACATTGAAATCAGGGGTGCTCCCAACGCAATAGT
GAAGATAAGCCAAAGTTATAACGAAAAGACAGAGTACCTTCATGGTTGGG
CAGCTGGTGGGGTCGTTAAGCCTTTACTTTCAACTAAGTCAAAATTGTGA
CTGATGAAACTCATAAAGATTCTCAAGTTTAATTATAGCTATACATATGT
TACGTAATTTGGAATTCATTAATTACAGTTTACGCTGAGCATATTTGAAC
ATCTTTTGATATCAAACACAGGTTTTCAAAATAATTGCGCAATAGAACTA
AATAGGCTTGTGCCCAAATGACCATTGATTTTAAAGCCCGAAGGGCTAGA
GTAGAATCTCTAACCTTTCCCAGGCAAGAAAAAGTGAAGCCACTTATTTC
CCATCCAGAAGGCGCCTAAAACGAGCCCCACTTACGACGGATTGTATCTA
GCGGTTCCTTTGTATTTTAGAACTGCATTTTTTTAAAATCTAGCGATAGA
TAGATTTTATTTTCAATCCGGTGTTTGTGTAAAAACCACGCGCAGGCGTT
CTGGATAGGAAATAAGTGGCTTCGTTTTCCCATTCAGGAGACTCGAGTCT
AGCCCTTCGGGCTTGGAAGTCAATGCAAATGACTTTTAAGTGAGACAGTC
TAATGGGTTAAAGTTACTGGTTATTAGCAGCACTTTTGTTACCGAGAGCG
AGTTTCTTCCCTCTCAGAGGTTGGGTTAGATCAATCAAACGAGATCTATG
TTTCGTTATTTCAACATTGAAAATTAATAAACTATTTTACACGTGAAACT
CATCGAAAGGCATTTGTATTTTTTCGAGCAAATAATTTATTTTAAGAGTG
CAATAGATTTTGCTCAAATTTTGAAGAGCTGTTCAAATGTTGGTTTAATT
TTGAACTTCCATTTTTCATTATTAGGGTAAACAGCCAATCAAAACGCATG
GAAATATCACATGAGATGTTAAACTTAGAAGAGAGACAGTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026921XLOC_026921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043201-exon-sc0004010-1575043694:7488..7597TCONS_00043201-exon-sc0004010-1575043694:7488..7597Clytia hemisphaericaexon
TCONS_00043201-exon-sc0004010-1575043694:4804..4872TCONS_00043201-exon-sc0004010-1575043694:4804..4872Clytia hemisphaericaexon
TCONS_00043201-exon-sc0004010-1510915933:7488..7597TCONS_00043201-exon-sc0004010-1510915933:7488..7597Clytia hemisphaericaexon
TCONS_00043201-exon-sc0004010-1510915933:4804..4872TCONS_00043201-exon-sc0004010-1510915933:4804..4872Clytia hemisphaericaexon
TCONS_00043201-exon-sc0004010-1491911889:7488..7597TCONS_00043201-exon-sc0004010-1491911889:7488..7597Clytia hemisphaericaexon
TCONS_00043201-exon-sc0004010-1491911889:4804..4872TCONS_00043201-exon-sc0004010-1491911889:4804..4872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004010supercontigsc0004010:4804..7597 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.46025	1.51649	0	2.67592	0	0	0	4.88476	0	0	0	0	2.35736	4.20778	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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