TCONS_00043194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043194
Unique NameTCONS_00043194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length171

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043194 ID=TCONS_00043194|Name=TCONS_00043194|organism=Clytia hemisphaerica|type=transcript|length=171bp
acGAAAGATTGTATCCAGCAGCagcgaaaaaaaacaaaggctTACTTCGG
AAAGGCTTGCTGATATAACATCTCCAGTATTAAATGGTGCGTGTTCCGCG
TCAGCTTACAAAAATATGAAGTCAAGAACATCAAGAGGCTGGGAGGGTCT
AACTACGTTGACATGGTTAAC
Run BLAST on NCBI

transcript from alignment at sc0003996:4951..7981-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043194 ID=TCONS_00043194|Name=TCONS_00043194|organism=Clytia hemisphaerica|type=transcript|length=3031bp|location=Sequence derived from alignment at sc0003996:4951..7981- (Clytia hemisphaerica)
ACGAAAGATTGTATCCAGCAGCAGCGAAAAAAAACAAAGGCTTACTTCGG
AAAGGTTTGTATTATCCCTTTATAACTTCTCAGATAGCTTACTAAATTTT
AAGTCTTGTCATCGTATTTTGGATAAGAATGACACATGTTTTATAACAGT
CGATAAGAGTAACCATTGCATTCACATAATTCCAACAGTGTGAACCTCCG
ACTTATCAGACTTAAAAAAACTTTATAGGGACGGTAACAGAATTAGGGCT
TAAAGAGTTTGATAAAATAGAAAAGGGATTACAATGTATTAGTTATAAAT
TGTACCCCTGTCTAAATGCCCCTTGTGGAAAATTTTTCTCAGTGGGGGTA
AATATTTCCATTGTTATAGTAGAGGCCATTATGTAGTGAAATAGCTTCCC
GTGTGAAGCAACTTGTAGAAGATCAAATTTGAGAGGTGAGACCGGGTGTA
ACCACCTGTTACCATGGAAACTGACGTCATTGGTTACTATGGCGACCAAA
ATAAAAAGTCGTCCAAAATTTCCATGGTGATCAAACCCGGTCTCACATCT
CAAATTTGATCTTCCACATTCAAGGAAGAATAATCAATCATAATATCCCT
TTATACAAACTGCTGCACACGGGAAGATATAGTGTCCTCCTTTGTATCCC
ATTGGGATAGGAAAAACTATTGTTTTCTGCTCAAAAAACCGTTAAGGTCG
TGATTGTTTTCAAGTGCATTTCTTCCATTTGATTTCCAACAGGAAGGTTA
AGGCCCCTTATCAAACTACGATCCAAATGTCAAACTGACCTTGAGAACTG
ATTTTCACCTATTTGGGTGACATTACCAGACCAATGCTCATAACTTGATT
TTCGAAATATAAATCGAAATTTTACATTTTTGGAAGTGATTTCAATCAAA
AACTTGATTTCTTAGGCTTGCTGATATAACATCTCCAGTATTAAATGGTG
CGTGTTCCGCGTCAGCTTACAAAAATATGAAGTAAGTGTTTTGTTTTTAT
TAATTTTCTCCATGAACATATATAAACGACCGGACTTCNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTACCTTCTAAATTCTT
AACAACCTTAGTATAGTCGTAATTCAGTCGTGGGGAGTGGCTTCTCTTTT
CTTGCTATATTATGGGGGGTATACGGGGTTTCTGATATCCGAAATTCCGA
GCATTTGACCTGATTTCTGATATTCCCCAAAAATATTGCGCTAATTCCGA
TACCGAATTATATTTTTTTCTGTAGACAATTTTTACTTAAAGAAAAACTT
TTCTATTCCTGCCCATAAAATCAAGGAAGAAACTGTTGGGAAAAGAATAT
TTTTGCCACATACTATACAACTATTACACCCTAATTGTTTGTTATGCTTT
ACCTAGCAGAGCCCTTTTTCTCTACCGTACCATGACAGCTCTTTATTTTT
TATAATTGCATGTCACGTTTGCATTTTAAATTCATAACCTTTAAGCAATT
TTCTAAAACAGTGATTTCTTTTCTCAATAGGTCAAGAACATCAAGAGGCT
GGGAGGGTCTAACTACGTTGACATGGTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026914XLOC_026914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043194-exon-sc0003996-1575043694:7928..7981TCONS_00043194-exon-sc0003996-1575043694:7928..7981Clytia hemisphaericaexon
TCONS_00043194-exon-sc0003996-1575043694:7001..7066TCONS_00043194-exon-sc0003996-1575043694:7001..7066Clytia hemisphaericaexon
TCONS_00043194-exon-sc0003996-1575043694:4951..5001TCONS_00043194-exon-sc0003996-1575043694:4951..5001Clytia hemisphaericaexon
TCONS_00043194-exon-sc0003996-1510915933:7928..7981TCONS_00043194-exon-sc0003996-1510915933:7928..7981Clytia hemisphaericaexon
TCONS_00043194-exon-sc0003996-1510915933:7001..7066TCONS_00043194-exon-sc0003996-1510915933:7001..7066Clytia hemisphaericaexon
TCONS_00043194-exon-sc0003996-1510915933:4951..5001TCONS_00043194-exon-sc0003996-1510915933:4951..5001Clytia hemisphaericaexon
TCONS_00043194-exon-sc0003996-1491911889:7928..7981TCONS_00043194-exon-sc0003996-1491911889:7928..7981Clytia hemisphaericaexon
TCONS_00043194-exon-sc0003996-1491911889:7001..7066TCONS_00043194-exon-sc0003996-1491911889:7001..7066Clytia hemisphaericaexon
TCONS_00043194-exon-sc0003996-1491911889:4951..5001TCONS_00043194-exon-sc0003996-1491911889:4951..5001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003996supercontigsc0003996:4951..7981 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	1.66717	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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