TCONS_00043192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043192
Unique NameTCONS_00043192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043192 ID=TCONS_00043192|Name=TCONS_00043192|organism=Clytia hemisphaerica|type=transcript|length=293bp
GATTCAGAGAAAATCTATCCGCTGGATCTGTAGGGAATGGAGTTCAGAAG
TCAGCCCAAACGATCTAAGGAAATCACTTAAACTCGAAACACTGGAAACA
AGGAGATCCAAATCGATAGTGAAAATGTTATTTGATATTTTATCAGGAAA
CAAATTCGTTGACAGCAGCATCCACCCAGCTAGACAGCGTTGTACAAATG
TGAAATATCAGCCCATTCAGGACAGGATTAAATGCTATTCAAACTCATTC
TTTCCATCTACCATCAAAATATAGAACAAATTACCAATTAGAA
Run BLAST on NCBI

transcript from alignment at sc0003992:2065..2357

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043192 ID=TCONS_00043192|Name=TCONS_00043192|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at sc0003992:2065..2357 (Clytia hemisphaerica)
TTCTAATTGGTAATTTGTTCTATATTTTGATGGTAGATGGAAAGAATGAG
TTTGAATAGCATTTAATCCTGTCCTGAATGGGCTGATATTTCACATTTGT
ACAACGCTGTCTAGCTGGGTGGATGCTGCTGTCAACGAATTTGTTTCCTG
ATAAAATATCAAATAACATTTTCACTATCGATTTGGATCTCCTTGTTTCC
AGTGTTTCGAGTTTAAGTGATTTCCTTAGATCGTTTGGGCTGACTTCTGA
ACTCCATTCCCTACAGATCCAGCGGATAGATTTTCTCTGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026913XLOC_026913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043192-exon-sc0003992-1491911889:2065..2357TCONS_00043192-exon-sc0003992-1491911889:2065..2357Clytia hemisphaericaexon
TCONS_00043192-exon-sc0003992-1510915933:2065..2357TCONS_00043192-exon-sc0003992-1510915933:2065..2357Clytia hemisphaericaexon
TCONS_00043192-exon-sc0003992-1575043694:2065..2357TCONS_00043192-exon-sc0003992-1575043694:2065..2357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003992supercontigsc0003992:2065..2357 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.700537	3.81668	8.87011	4.20031	2.27153	3.4951	3.24837	2.81656	0.981863	1.71617	3.23775	1.40226	1.96044	1.76343	0.478233	0.78341	1.75953	1.40974	0.895286	0.541477	2.667	2.65737	2.29378	1.81445	0	0.807014	0.741752	0	2.97696	0.599865
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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