TCONS_00043190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043190
Unique NameTCONS_00043190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043190 ID=TCONS_00043190|Name=TCONS_00043190|organism=Clytia hemisphaerica|type=transcript|length=269bp
tcagcGTTTTGCAGCTGTGATTATGAGAATCAGAGATCCAAGGACAACTG
CTTTGATCTTTAGTTCCGGTAAAATGGTTTGCACAGGTGCAAAAAGCGAA
GAGCAATCAAGGCTAGCTGCAAGAAAATATGCTCGTGTTATTCAAAAATT
AGGGTTCCCAGCAAAGTTTGTCGACTTCAAAATACAGAACATAGTGGGTA
GTTGCGACGTACGGTTTCCCATTCGACTTGAAGGACTTGTATTACAACAC
AGTCAGTTCGCCAGGTATG
Run BLAST on NCBI

transcript from alignment at sc0003991:566..2233-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043190 ID=TCONS_00043190|Name=TCONS_00043190|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at sc0003991:566..2233- (Clytia hemisphaerica)
TCAGCGTTTTGCAGCTGTGATTATGAGAATCAGAGATCCAAGGACAACTG
CTTTGATCTTTAGTTCCGGTAAAATGGTTTGCACAGGTGCAAAAAGGTAC
TCTCTTGAAAGATGTCTTAACAAAAGATTATGCCAAAGGATATTGTATTG
TTTATAAATGACGATCAATTTGTGTTTGTAGCTGAGTTTTGATTCCCACT
TTCCCGGGTTGTTTTGCTTAGCTGTTGGAACAACCCCTTATTACTCTAGA
TTTAGATTAGTTTATGGTGGAGATTTGACAGAATTATGTTATCATTATGT
AACCATCATGTTGAGTTTGGGGTAAAACTCGTTACATTTTTTTAAACCCT
GAATATCGTTCCCTGCTAGTTCAGTAGAAAATCCCCATAAAATTTGTCGC
GTTATAATAATCAAAGAAGATCATTTTTAAAAGTAGAATCCACTAAACAG
TAACAGGCTTCATTGTTTTAAAATCAACTAGACTATAATTTTGTTTTCAC
TATCATTTTTTTAGCGAAGAGCAATCAAGGCTAGCTGCAAGAAAATATGC
TCGTGTTATTCAAAAATTAGGGTTCCCAGTAAGTACTCTTCCATACAGGA
TAGCCCACAAGACAAAAGGCTTTTCCAGAAAAAAAACCGTATACCCCCTG
TTGAGGAGGTCTATTTCCGTTCCAAGGGGGTAAGGTTTGATATGTGGCGG
AATTCCCTAGTGAGATACATACAAAAATCTGTCAAAAATAACTGGAATTC
CATGGGGGTAGCTTTTTAAATCCTACTAAAATTCAGATTTCCAAAGAGGT
TTAAACCTGAAATTGCCTGGGATTCCAGGGGGTTACAGCATTTCCAGCCA
CAGAGGGATGAACCTCAACAGAGGTATACGTTTTTTTTCTGGAAAAGCCC
ATTATTTTCTGATCAGCAAATAATTGTTTTCCATGAAGTTCTTTCATTTC
ATTTAAAACAATTAAAAGCATCAGGTTTTACGTTTAATGTTTTAAAAGAC
TGCCAAACAAACAGCCCTCCCCCAGTCACTTTTATTTTCAGAATTTATAT
TTTATATTAATTGCCTTCATTTATTAAAATTTGTTCCATTCGTCCTCTAA
TAGACCTTTTCATAAATGGCGTTACGAACATACTTGCCTCGTTTTGAAAT
TATTGCCACGGTGATTAACTCCCAGCGGATTTTATTAAAACTACTTCCTA
TTCAAAAAAAAAAAACATTTAATGTCTCAAGAGACATAATCACTATAGTA
ATTGTTTGAATACGAGGCAAGTGATGTTCGTGACGTAATTTATGAAAAGG
TCTATTGCGGACCTAATTATTTCAAATAACTTATTCCCTAGTGTCTGTCT
TCTTTGGCTGAATGGAATTATTGATAAAGTAGAAACATGGTTTTTTTTAT
TATTATTACAACGAATACAAAGTTCAGACACGCCGTGGACCTCTAGAACT
GATCTTTGTTTATTTACAATAAATAGCGCAGTTCATGTTTTGCCCATGCT
TTGCCCATGCTTTGTTTAAATTATGTTTGAACGATTTTATCGAAGGTTTT
CTTTTGTAGGCAAAGTTTGTCGACTTCAAAATACAGAACATAGTGGGTAG
TTGCGACGTACGGTTTCCCATTCGACTTGAAGGACTTGTATTACAACACA
GTCAGTTCGCCAGGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026911XLOC_026911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043190-exon-sc0003991-1575043694:2138..2233TCONS_00043190-exon-sc0003991-1575043694:2138..2233Clytia hemisphaericaexon
TCONS_00043190-exon-sc0003991-1575043694:1656..1719TCONS_00043190-exon-sc0003991-1575043694:1656..1719Clytia hemisphaericaexon
TCONS_00043190-exon-sc0003991-1575043694:566..674TCONS_00043190-exon-sc0003991-1575043694:566..674Clytia hemisphaericaexon
TCONS_00043190-exon-sc0003991-1510915933:2138..2233TCONS_00043190-exon-sc0003991-1510915933:2138..2233Clytia hemisphaericaexon
TCONS_00043190-exon-sc0003991-1510915933:1656..1719TCONS_00043190-exon-sc0003991-1510915933:1656..1719Clytia hemisphaericaexon
TCONS_00043190-exon-sc0003991-1510915933:566..674TCONS_00043190-exon-sc0003991-1510915933:566..674Clytia hemisphaericaexon
TCONS_00043190-exon-sc0003991-1491911889:2138..2233TCONS_00043190-exon-sc0003991-1491911889:2138..2233Clytia hemisphaericaexon
TCONS_00043190-exon-sc0003991-1491911889:1656..1719TCONS_00043190-exon-sc0003991-1491911889:1656..1719Clytia hemisphaericaexon
TCONS_00043190-exon-sc0003991-1491911889:566..674TCONS_00043190-exon-sc0003991-1491911889:566..674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003991supercontigsc0003991:566..2233 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.0515	28.5412	121.569	120.467	15.3508	16.6134	11.882	9.85865	36.4635	43.6149	35.8409	31.0651	29.3649	39.5322	32.9351	34.1774	43.4035	39.2111	14.7486	23.1047	20.9123	21.966	25.6763	30.1728	0	0	17.677	14.3161	26.1036	30.1091
Blast
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BLAST of TCONS_00043190 vs. Swiss-Prot (Human)
Match: TBP (TATA-box-binding protein OS=Homo sapiens GN=TBP PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.397e-53
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = 2 
Query:    2 QRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVRFPIRLEGLVLQHSQFARY 268
            +RFAAVIMRIR+PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARV+QKLGFPAKF+DFKIQN+VGSCDV+FPIRLEGLVL H QF+ Y
Sbjct:  195 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 283
The following BLAST results are available for this feature:
BLAST of TCONS_00043190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBP2.397e-5388.76TATA-box-binding protein OS=Homo sapiens GN=TBP PE... [more]
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