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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043187 ID=TCONS_00043187|Name=TCONS_00043187|organism=Clytia hemisphaerica|type=transcript|length=344bp
AGAGTCCATGTGCCAACATCGAAACCGCGCGAACAGGCTGGTCTCAATAT
GGTAGCCGCTCACAGCGACATTAATAATTCAGAAAATTACCAACAGACTG
GCAAAACAAGAACAGAAGAACCGACTGTCAAACTGTAAACATTAACATTG
AACATCAGGAACATGGGCAACAAACAAACACACAAGTTTGATAAGGATGA
CTTGCTGCTATCAGTGGTGATCattaagaaatcatagcatacAAGGTTCT
ACACACAAATCACCTTGCAAATCGTAACCTGCCCAACCTGATGATTgtga
agatttttttcaaagctgTGAGCATTGGTAAGTGTGCATATTAT Run BLAST on NCBI transcript from alignment at sc0003984:1194..2875- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043187 ID=TCONS_00043187|Name=TCONS_00043187|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at sc0003984:1194..2875- (Clytia hemisphaerica)
AGAGTCCATGTGCCAACATCGAAACCGCGCGAACAGGCTGGTCTCAATAT
GGTAGCCGCTCACAGCGACATTAATAATTCAGAAAATTACCAACAGACTG
GCAAAACAAGAACAGAAGAACCGACTGTCAAACTGTAAACATTAACATTG
AACATCAGGAACATGGGCAACAAACAAACACACAAGTTTGATAAGGATGA
CTTGCTGCTATCAGTGGTGATCATTAAGAAATCATAGCATACAAGGTATG
TCTGAAATTTTTATTCCAAAATATATAAAGTAAGGCAGCCAGGGAAATAA
GTATACTTAGACTACTGTCTGGACTGTACGTACTCTGTATAGTAAAACAG
AAGTAGTGCTAGTGGTAAGTTTTAAGTTTGCCTGATATGTCAATGTGTGC
GAGTAACGAAAGTAAGTTAGGTTGTTGGTTCAGTTGGTTGTTGGGGTATG
GGTATGGCAAAATTTCTTGTCAAGAATTTACGAATTTGAATTAAGGTAGG
TGAGTATGTTGTTCGTTGTCAGTGTTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGAAGTGATACTATGTTTGGCACAGTACTGCATTGACAAAGCCAAGT
AAAAAGAAGCTTTTTTTGTCTGGGAAAAGATGAACAGTTTACCCTCAACC
CCAAATTAATTATACCGTGAGATCGGGTAACTTGCATCAGTGGAGGCTAA
CATGCATAACCCTTAAATGAATAATCTGGCTGGTCATTAAAATATAAAGT
TACTTAAATCAAAACAAATATGGTAGAGAAGGGCTGCGAGCGGAGCTGCT
TAGTTGATTTGTTTTAAAATTTTGCTACTTTAATTTAGTCAGTCATTTGA
TGGTTATACAAGTTTTCCTCCACTGATGCAAGTTACCCAACTTCACGATA
TTATACTTTATTTATGATGGCTATAAACTATTTCTCTTAAACTTGCTACC
AAAATACTTACATCAGACCTATTCCAATCCTCATGGTCAAATAGACCTTT
TTTCAAAGAGGACGTCCTGTTGAATAATTATGTAGTCCAGCCAAAAAAAA
CAATGGTAGAGGCATGCATAATTATGCATGGTTTTATCATTGTTTTTCTG
CTGGACCACATAATTATTCAACAGGGTGGCCTCTTTGAAAAAAGGTCTAT
GGTGATGGCTTCTCCATAAAAGCAAATAACACAATGCAAATATATTGCAG
GAATAGTGTCAGGACATGCAGGCAACCTAGTAGGGTTGGGTATGGTTGTG
GTTGGGTTTCAGATTGGCTGGGAATTGGGTCATTATCAGTTAGTGTCAGA
GTTGGAGCTCGATCGAAACAAACACTTTTTTGTGATTTTCTCTTAATATA
GTGTAGTTTGTAATCTGTAGTTTGTACAATAATAAATAGCAGCCACCAGA
GAAATTCTCCTGGCTTGTATCAGTAGCGCAGTGGTTTGAGTGTTGGGTTT
CTGATCATATTGGAACTTTGCATTTAGTGGGCTCGTATGAAATGATTTGT
CTTTCGCAATAGCAATATTCGACTTTCAATGCATGTCTTGTAGTACAGTT
GCCATTCAAGCTTTGCTGGTTTCTTCACTTCAGGTTCTACACACAAATCA
CCTTGCAAATCGTAACCTGCCCAACCTGATGATTGTGAAGATTTTTTTCA
AAGCTGTGAGCATTGGTAAGTGTGCATATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043187-exon-sc0003984-1575043694:2631..2875 | TCONS_00043187-exon-sc0003984-1575043694:2631..2875 | Clytia hemisphaerica | exon |
| TCONS_00043187-exon-sc0003984-1575043694:1194..1292 | TCONS_00043187-exon-sc0003984-1575043694:1194..1292 | Clytia hemisphaerica | exon |
| TCONS_00043187-exon-sc0003984-1510915933:2631..2875 | TCONS_00043187-exon-sc0003984-1510915933:2631..2875 | Clytia hemisphaerica | exon |
| TCONS_00043187-exon-sc0003984-1510915933:1194..1292 | TCONS_00043187-exon-sc0003984-1510915933:1194..1292 | Clytia hemisphaerica | exon |
| TCONS_00043187-exon-sc0003984-1491911889:2631..2875 | TCONS_00043187-exon-sc0003984-1491911889:2631..2875 | Clytia hemisphaerica | exon |
| TCONS_00043187-exon-sc0003984-1491911889:1194..1292 | TCONS_00043187-exon-sc0003984-1491911889:1194..1292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003984 | supercontig | sc0003984:1194..2875 - |
Blast
The following BLAST results are available for this feature:
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