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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043179 ID=TCONS_00043179|Name=TCONS_00043179|organism=Clytia hemisphaerica|type=transcript|length=2081bp
AGCCATTTCATTATTCTAGCCTACGTACCTTTGGAAGCCTTGGTTGATGA
TAGCCCTGGGTTTCATGCGTTATCATCTTTCACCTTTTTGTTTTAACTGG
GGTTTTTAACTATCCACCCATGGGTTCATATGTCAAGTCAGGCAGTTGTT
TTTCACCCCATTTGTTCTCCCTTCCTTAATCCCCGTTGATATATCCATTG
GTGTTGATAGCGCCTTAAGTCTGTGTTTACACGTCCATTTTTTCCAGATC
ACTTACAGACGGCTCATAAATATACGTCACAAAAAAGcgtttatttgacg
tcaaaaaaaatttttttttttgttaaaaaaactgaatttttttagctaga
aatataccttgaaaacggccctggccgaaacatgttggaaatttctagca
tctaatggtatttttgtctcgatcctccgtccgataCATTGGTGTTGGTT
GATACATTGGTAATTATTTCAGCTTAAATGTACCTTTCGGAAATCTACTG
GTTGGATAGCCCTGGGCTTATTGTGTTATGTTTCACCTTTAATTTTAACT
GGGTTTCTCACTATCCACCCATAAGTTCACTTTAAGTTAGGCATTTGTTT
TTCACCCCTCTTTTCTTCATCCTATCATTCCTGTTGACGTCCAATGACGT
CATGATGCATTGGTAATTATTTAGTCTATGAACTTTTGGAGACCTTTGTG
TTGTCATGTTATACTATTGTTTTTAACTGGGTTTCTAACTAGCCACCCAT
GGGTTCACCTGTAAATTGGGCagttttttctttccttcttttttttttca
cttggccttttttgtttgttttcattcTATTATTCCTGGCGACGTCTAAT
GACGTCATGATACACTGGTAATAATCTTAGCCTATGATCCCATGCAAACC
TACTGGTTGGGTAGCTCTTGGTCTTGTGCCGTCAAGTTTTATTGTCTTAA
CTGGGTTTCTTACTATCCACCCATGGGTTCACCTGTAAGTTGGATACTTG
TTTTTCACCCTTTTCTTCATCCTATCACTCATGTCGACGTCCAATGATGC
ATTATACCTTGGTAATTACTTAGCCTATGAACTCTTCCAAAACCTACTGG
TTGGATAGCCCTGGGTTTCCGTGTTGtcatgttttactttttttttaact
ggGTTTCTAACTATCCACCCAAGAGTTCACCTGTAAGTTGGACAGTTGTT
TTTCACCCTTCTTTTCTTCATCCATCACTCATGCCGACGTCCANTTGTCa
tgttttacttttgtttttaactgGGTTTCTAACTATCCACCCAAGAGTTC
ACCTGTAAGTTGGACAGTTGTTTTTCACCCTTCTTTTCTTCATCCATCAC
TCATGCCGACGTCCAATGACGTCATGATACATTGGTAATTACTTAGCCTA
TGAGCTTTTGGGAACCTACTGATTGGATAGCCCTGGGTCTGTGCTGTCat
gtttacttttattttagttGGGTTTCTAACTATCTACCCATGGGTTCACC
TGTAAATTGggcagtttttttttcttcttttttttttcacctgGCCTTTT
TTGNTGTGCTGTCatgtttacttttattttagttGGGTTTCTAACTATCC
ACCCATGGGTTCACCTGTAAATTGggcagtttttttttcttcttttcttt
tttcacctggccttttttgtttttttcattctattATTCCTAGCGACGTC
TAATGACGTCATGATACACTGGTAATAAACTTAGCCTATGATCCCATGCA
AACCTACTGGTTGGGTAGCTTTTGGTCTTGTGTCgttaagttttattttg
ttttaactGGGTTTCTTACTATCCAACCTTGGGTTCACATGTAAGTGGGa
cagatatttttattttctttcttgttttctCTTGCTATAATCCCTGGTGA
CGTCGAATGACGTCACGATTCAATGGTAATTATATTAGCAATGAACATGT
GGGAATTTACTTGTTGAGATgtgggttttgtttttattttattttttatt
ttttttctctatacAGCTGTAACATAAATTGGGTCTGGAGACTTCACAAT
AAGTAGATTGTTTTTTTGGTTTCAACTACCC Run BLAST on NCBI transcript from alignment at sc0003977:3734..5814 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043179 ID=TCONS_00043179|Name=TCONS_00043179|organism=Clytia hemisphaerica|type=transcript|length=2081bp|location=Sequence derived from alignment at sc0003977:3734..5814 (Clytia hemisphaerica)
GGGTAGTTGAAACCAAAAAAACAATCTACTTATTGTGAAGTCTCCAGACC
CAATTTATGTTACAGCTgtatagagaaaaaaaataaaaaataaaataaaa
acaaaacccacATCTCAACAAGTAAATTCCCACATGTTCATTGCTAATAT
AATTACCATTGAATCGTGACGTCATTCGACGTCACCAGGGATTATAGCAA
GagaaaacaagaaagaaaataaaaatatctgtCCCACTTACATGTGAACC
CAAGGTTGGATAGTAAGAAACCCagttaaaacaaaataaaacttaacGAC
ACAAGACCAAAAGCTACCCAACCAGTAGGTTTGCATGGGATCATAGGCTA
AGTTTATTACCAGTGTATCATGACGTCATTAGACGTCGCTAGGAATaata
gaatgaaaaaaacaaaaaaggccaggtgaaaaaagaaaagaagaaaaaaa
aactgccCAATTTACAGGTGAACCCATGGGTGGATAGTTAGAAACCCaac
taaaataaaagtaaacatGACAGCACANCAAAAAAGGCcaggtgaaaaaa
aaaagaagaaaaaaaaactgccCAATTTACAGGTGAACCCATGGGTAGAT
AGTTAGAAACCCaactaaaataaaagtaaacatGACAGCACAGACCCAGG
GCTATCCAATCAGTAGGTTCCCAAAAGCTCATAGGCTAAGTAATTACCAA
TGTATCATGACGTCATTGGACGTCGGCATGAGTGATGGATGAAGAAAAGA
AGGGTGAAAAACAACTGTCCAACTTACAGGTGAACTCTTGGGTGGATAGT
TAGAAACCcagttaaaaacaaaagtaaaacatGACAANTGGACGTCGGCA
TGAGTGATGGATGAAGAAAAGAAGGGTGAAAAACAACTGTCCAACTTACA
GGTGAACTCTTGGGTGGATAGTTAGAAACccagttaaaaaaaaagtaaaa
catgaCAACACGGAAACCCAGGGCTATCCAACCAGTAGGTTTTGGAAGAG
TTCATAGGCTAAGTAATTACCAAGGTATAATGCATCATTGGACGTCGACA
TGAGTGATAGGATGAAGAAAAGGGTGAAAAACAAGTATCCAACTTACAGG
TGAACCCATGGGTGGATAGTAAGAAACCCAGTTAAGACAATAAAACTTGA
CGGCACAAGACCAAGAGCTACCCAACCAGTAGGTTTGCATGGGATCATAG
GCTAAGATTATTACCAGTGTATCATGACGTCATTAGACGTCGCCAGGAAT
AATAgaatgaaaacaaacaaaaaaggccaagtgaaaaaaaaaagaaggaa
agaaaaaactGCCCAATTTACAGGTGAACCCATGGGTGGCTAGTTAGAAA
CCCAGTTAAAAACAATAGTATAACATGACAACACAAAGGTCTCCAAAAGT
TCATAGACTAAATAATTACCAATGCATCATGACGTCATTGGACGTCAACA
GGAATGATAGGATGAAGAAAAGAGGGGTGAAAAACAAATGCCTAACTTAA
AGTGAACTTATGGGTGGATAGTGAGAAACCCAGTTAAAATTAAAGGTGAA
ACATAACACAATAAGCCCAGGGCTATCCAACCAGTAGATTTCCGAAAGGT
ACATTTAAGCTGAAATAATTACCAATGTATCAACCAACACCAATGtatcg
gacggaggatcgagacaaaaataccattagatgctagaaatttccaacat
gtttcggccagggccgttttcaaggtatatttctagctaaaaaaattcag
tttttttaacaaaaaaaaaaattttttttgacgtcaaataaacgCTTTTT
TGTGACGTATATTTATGAGCCGTCTGTAAGTGATCTGGAAAAAATGGACG
TGTAAACACAGACTTAAGGCGCTATCAACACCAATGGATATATCAACGGG
GATTAAGGAAGGGAGAACAAATGGGGTGAAAAACAACTGCCTGACTTGAC
ATATGAACCCATGGGTGGATAGTTAAAAACCCCAGTTAAAACAAAAAGGT
GAAAGATGATAACGCATGAAACCCAGGGCTATCATCAACCAAGGCTTCCA
AAGGTACGTAGGCTAGAATAATGAAATGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043179-exon-sc0003977-1491911889:3734..5814 | TCONS_00043179-exon-sc0003977-1491911889:3734..5814 | Clytia hemisphaerica | exon |
| TCONS_00043179-exon-sc0003977-1510915933:3734..5814 | TCONS_00043179-exon-sc0003977-1510915933:3734..5814 | Clytia hemisphaerica | exon |
| TCONS_00043179-exon-sc0003977-1575043694:3734..5814 | TCONS_00043179-exon-sc0003977-1575043694:3734..5814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003977 | supercontig | sc0003977:3734..5814 . |
Blast
The following BLAST results are available for this feature:
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