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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043169 ID=TCONS_00043169|Name=TCONS_00043169|organism=Clytia hemisphaerica|type=transcript|length=645bp
GAAACCGATGTTTATCTACACGCTGATAACTGCTCTGgacAAAACAAGAA
TAATGCTTTCCTCTGGTACCTAATGTGGAGAATTCTGAACGGACTTCACG
AGAAGATCGAATATAGTTTTATGATAGCTGGACACACAAAGTTCAGTTGT
GACAgGTGCTTTGGTAGTTTCAAGAAAAAGTTGCGAAGTACGTATGTTTC
ATCCCTCTATGAAATTGGAGAAGTCTGCGACAGTACCAAGTGTAACTTTG
CTGTTCTCGTTGGGAATCATAATAAGGAGATCTACGTAAAGACATACGAC
TGGACTACTCACTTTGAAAAGACCCTGAAGTTTCTAAAGTTTAAAGATAT
GTTGAAGTATCACCACTTCAGAATGTCTAAAGATGAACCAGGCATAGTAT
CTTGTTTAGAAACTCTGGATGCTGAGCCAGTTAAAATCTCACTTTTTAGA
AAGCGTAACGCACCAGCTGTCACATCTGTTCTACCAGATGTTGTAGAACC
AAAGGGATTTACAAAAGCACGTGCTGACTACCTGCGCAAGGAAATACGTC
AGTTTTGCAAACATGGAACAGAAAAATTGGTTGCtccttaaaaacatttt
taaaacaattatTATTTAAAATATTCATAGCCAATACAAGTTTTC Run BLAST on NCBI protein sequence of TCONS_00043169-protein >TCONS_00043169-protein ID=TCONS_00043169-protein|Name=TCONS_00043169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
ETDVYLHADNCSGQNKNNAFLWYLMWRILNGLHEKIEYSFMIAGHTKFSC
DRCFGSFKKKLRSTYVSSLYEIGEVCDSTKCNFAVLVGNHNKEIYVKTYD
WTTHFEKTLKFLKFKDMLKYHHFRMSKDEPGIVSCLETLDAEPVKISLFR
KRNAPAVTSVLPDVVEPKGFTKARADYLRKEIRQFCKHGTEKLVAP Run BLAST on NCBI transcript from alignment at sc0003972:1047..2707+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043169 ID=TCONS_00043169|Name=TCONS_00043169|organism=Clytia hemisphaerica|type=transcript|length=1661bp|location=Sequence derived from alignment at sc0003972:1047..2707+ (Clytia hemisphaerica)
GAAACCGATGTTTATCTACACGCTGATAACTGCTCTGGTAAGTTGTTACA
AATATTCGAAAGAACTCACATAGGGGGTCATCCCATTgaatttaaagccc
gaagggctagagttcaatctctaacctttctcaggcaagaaaaactGAAG
CCTTGAAAAATGcaccgcatttttgacgacagattgaatctagcaattcc
tttgttcacgattgatatttttttcgaaatttagcggtaaattttagttt
caatctgtcatttgcgcaactttggtaggatttgttagcttcaaatccta
ccaaggagattgacttctagcccttcgggcttataattCATTGGGTCATC
CATCTACTACGTgcgaattttcaaaatatttgacaccccTTGTacacaga
gaacaatagaaatgacgtcattcaaacaaTAGACATACGCTTTGGATAAA
CCCctcccccttcactgtgtacgtactatatggaaaGAAAAGAACTGGAA
CTTTAGGTACCCCACCATCTTGAAACATCGAAATTTGACTGATGGATTGA
TGTCTGTAATTCACCTCAAAATCTATACAACATAAAGTTAACATTATTTG
GACTCAAAAAATGAATACcctttttatgaaagttttagCTTTAGCCTTTG
ATTATTTTTAAGgttcctttttaatttttaggacAAAACAAGAATAATGC
TTTCCTCTGGTACCTAATGTGGAGAATTCTGAACGGACTTCACGAGAAGA
TCGAATATAGTTTTATGATAGCTGGACACACAAAGTTCAGTTGTGACAgg
ttcttatttttcttattacatcatacaagtttttttttcttttaaaaatt
taagaacattttcaggctttagacatgaaactttttacaaaattaaaatt
tgatcaaaatttctcacaaaatgctgaaaataagaacagtttcGGGCTTT
CAAAACCCCAAAAGCTATGAACATCGGAAGACTTTTTCacactcttataa
aaaatgtgtagactAATCCTACGTGGGTACACCAAGAAAACAAACTGATA
TTGATGTAAATTTACAGTTGATTTTGAAGCCTTGACAGAGATTTTCAGGG
TACTTAGCTTGAGGCTGATCAATATCTATTAGGTTGGTATTTCAATATCA
CCTATTGATCTTTTTCTTCAGGTGCTTTGGTAGTTTCAAGAAAAAGTTGC
GAAGTACGTATGTTTCATCCCTCTATGAAATTGGAGAAGTCTGCGACAGT
ACCAAGTGTAACTTTGCTGTTCTCGTTGGGAATCATAATAAGGAGATCTA
CGTAAAGACATACGACTGGACTACTCACTTTGAAAAGACCCTGAAGTTTC
TAAAGTTTAAAGATATGTTGAAGTATCACCACTTCAGAATGTCTAAAGAT
GAACCAGGCATAGTATCTTGTTTAGAAACTCTGGATGCTGAGCCAGTTAA
AATCTCACTTTTTAGAAAGCGTAACGCACCAGCTGTCACATCTGTTCTAC
CAGATGTTGTAGAACCAAAGGGATTTACAAAAGCACGTGCTGACTACCTG
CGCAAGGAAATACGTCAGTTTTGCAAACATGGAACAGAAAAATTGGTTGC
tccttaaaaacatttttaaaacaattatTATTTAAAATATTCATAGCCAA
TACAAGTTTTC Coding sequence (CDS) from alignment at sc0003972:1047..2707+ >TCONS_00043169 ID=TCONS_00043169|Name=TCONS_00043169|organism=Clytia hemisphaerica|type=CDS|length=1773bp|location=Sequence derived from alignment at sc0003972:1047..2707+ (Clytia hemisphaerica)
GAAACCGATGTTTATCTACACGCTGATAACTGCTCTGgacAAAACAAGAA
TAATGCTTTCCTCTGGTACCTAATGTGGAGAATTCTGAACGGACTTCACG
AGAAGATCGAATATAGTTTTATGATAGCTGGACACACAAAGTTCAGTTGT
GACAgGTGCTTTGGTAGTTTCAAGAAAAAGTTGCGAAGTACGTATGTTTC
ATCCCTCTATGAAATTGGAGAAGTCTGCGACAGTACCAAGTGTAACTTTG
CTGTTCTCGTTGGGAATCATAATAAGGAGATCTACGTAAAGACATACGAC
TGGACTACTCACTTTGAAAAGACCCTGAAGTTTCTAAAGTTTAAAGATAT
GTTGAAGTATCACCACTTCAGAATGTCTAAAGATGAACCAGGCATAGTAT
CTTGTTTAGAAACTCTGGATGCTGAGCCAGTTAAAATCTCACTTTTTAGA
AAGCGTAACGCACCAGCTGTCACATCTGTTCTACCAGATGTTGTAGAACC
AAAGGGATTTACAAAAGCACGTGCTGACTACCTGCGCAAGGAAATACGTC
AGTTTTGCAAACATGGAACAGAAAAATTGGTTGCtccttaaGAAACCGAT
GTTTATCTACACGCTGATAACTGCTCTGgacAAAACAAGAATAATGCTTT
CCTCTGGTACCTAATGTGGAGAATTCTGAACGGACTTCACGAGAAGATCG
AATATAGTTTTATGATAGCTGGACACACAAAGTTCAGTTGTGACAgGTGC
TTTGGTAGTTTCAAGAAAAAGTTGCGAAGTACGTATGTTTCATCCCTCTA
TGAAATTGGAGAAGTCTGCGACAGTACCAAGTGTAACTTTGCTGTTCTCG
TTGGGAATCATAATAAGGAGATCTACGTAAAGACATACGACTGGACTACT
CACTTTGAAAAGACCCTGAAGTTTCTAAAGTTTAAAGATATGTTGAAGTA
TCACCACTTCAGAATGTCTAAAGATGAACCAGGCATAGTATCTTGTTTAG
AAACTCTGGATGCTGAGCCAGTTAAAATCTCACTTTTTAGAAAGCGTAAC
GCACCAGCTGTCACATCTGTTCTACCAGATGTTGTAGAACCAAAGGGATT
TACAAAAGCACGTGCTGACTACCTGCGCAAGGAAATACGTCAGTTTTGCA
AACATGGAACAGAAAAATTGGTTGCtccttaaGAAACCGATGTTTATCTA
CACGCTGATAACTGCTCTGgacAAAACAAGAATAATGCTTTCCTCTGGTA
CCTAATGTGGAGAATTCTGAACGGACTTCACGAGAAGATCGAATATAGTT
TTATGATAGCTGGACACACAAAGTTCAGTTGTGACAgGTGCTTTGGTAGT
TTCAAGAAAAAGTTGCGAAGTACGTATGTTTCATCCCTCTATGAAATTGG
AGAAGTCTGCGACAGTACCAAGTGTAACTTTGCTGTTCTCGTTGGGAATC
ATAATAAGGAGATCTACGTAAAGACATACGACTGGACTACTCACTTTGAA
AAGACCCTGAAGTTTCTAAAGTTTAAAGATATGTTGAAGTATCACCACTT
CAGAATGTCTAAAGATGAACCAGGCATAGTATCTTGTTTAGAAACTCTGG
ATGCTGAGCCAGTTAAAATCTCACTTTTTAGAAAGCGTAACGCACCAGCT
GTCACATCTGTTCTACCAGATGTTGTAGAACCAAAGGGATTTACAAAAGC
ACGTGCTGACTACCTGCGCAAGGAAATACGTCAGTTTTGCAAACATGGAA
CAGAAAAATTGGTTGCtccttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043169-exon-sc0003972-1491911889:1047..1083 | TCONS_00043169-exon-sc0003972-1491911889:1047..1083 | Clytia hemisphaerica | exon |
| TCONS_00043169-exon-sc0003972-1510915933:1047..1083 | TCONS_00043169-exon-sc0003972-1510915933:1047..1083 | Clytia hemisphaerica | exon |
| TCONS_00043169-exon-sc0003972-1575043694:1047..1083 | TCONS_00043169-exon-sc0003972-1575043694:1047..1083 | Clytia hemisphaerica | exon |
| TCONS_00043169-exon-sc0003972-1491911889:1728..1845 | TCONS_00043169-exon-sc0003972-1491911889:1728..1845 | Clytia hemisphaerica | exon |
| TCONS_00043169-exon-sc0003972-1510915933:1728..1845 | TCONS_00043169-exon-sc0003972-1510915933:1728..1845 | Clytia hemisphaerica | exon |
| TCONS_00043169-exon-sc0003972-1575043694:1728..1845 | TCONS_00043169-exon-sc0003972-1575043694:1728..1845 | Clytia hemisphaerica | exon |
| TCONS_00043169-exon-sc0003972-1491911889:2218..2707 | TCONS_00043169-exon-sc0003972-1491911889:2218..2707 | Clytia hemisphaerica | exon |
| TCONS_00043169-exon-sc0003972-1510915933:2218..2707 | TCONS_00043169-exon-sc0003972-1510915933:2218..2707 | Clytia hemisphaerica | exon |
| TCONS_00043169-exon-sc0003972-1575043694:2218..2707 | TCONS_00043169-exon-sc0003972-1575043694:2218..2707 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003972 | supercontig | sc0003972:1047..2707 + |
Blast
The following BLAST results are available for this feature:
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