TCONS_00043164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043164
Unique NameTCONS_00043164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043164 ID=TCONS_00043164|Name=TCONS_00043164|organism=Clytia hemisphaerica|type=transcript|length=883bp
GGACTAGGCAGGAAGGCACACAGTATATtctacatggtattttcagttct
tgaaatGAAGACAGTGACATGGCAAATATGTACAGGAATAAAAACTAGAA
TATAAAATAAATGAGTACACAGATACGCGTAAATGAAACACACAATACAA
ACATATAATAGTATACAATATAGCATAGGTGATAAATGACAAAACAGGAG
TAAATAATGACATGCAAACAAATAAGAGTATACAgcttaaaatgacaaaa
acggCAGTAACTAATAGCACGAAATGTACCAATAGACAGGTATATAAATA
AACAAAGCTTAAAATAGGTAAATGGAAGCTCCCGAGATGCTGGGGAGGGT
GGAGGAGCAAAAAATACAGCAGTCAGcactaagaaatgaagaactgaaaa
ggGACCATGAGGAGAAACTGAGGCCTTAAAGGGCCTTAAATAGAACATGA
GAGTGAGGCTGATTCAAGAGTCCggataaaccaaaacaaaccaaatgcat
ctaaactctgatatacaAACATATATCAGAAACTTAAACACAAGTGGTCG
AAAGGGGGGGGCTAGGCAGGAAGGCACACAGTATATtctacatggtattt
tcagttcttgaaatGAAGACAGTGACATGGCAAATATGTACAGGAATAAA
AACTAGAATATAAAATAAATGTCCAAATCCAATGTGTGGTAGTTAGTTAG
GTAGAGACGAAATATATGAAGAAATTGAATGCTGGGCGTGCAGGCGCTGG
GACAAGGGCATATGTAAATAAAGGTACGTTTATCAGACTTCCAATCACCC
ATGACTGCAATGGAGTCAAGTGGAACCCCGGCCTCCAACGCAAAAGTGGC
CCCACCACGTCTGAATGAGTGTGATCCATATTG
Run BLAST on NCBI

transcript from alignment at sc0003969:2916..3798

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043164 ID=TCONS_00043164|Name=TCONS_00043164|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at sc0003969:2916..3798 (Clytia hemisphaerica)
CAATATGGATCACACTCATTCAGACGTGGTGGGGCCACTTTTGCGTTGGA
GGCCGGGGTTCCACTTGACTCCATTGCAGTCATGGGTGATTGGAAGTCTG
ATAAACGTACCTTTATTTACATATGCCCTTGTCCCAGCGCCTGCACGCCC
AGCATTCAATTTCTTCATATATTTCGTCTCTACCTAACTAACTACCACAC
ATTGGATTTGGACATTTATTTTATATTCTAGTTTTTATTCCTGTACATAT
TTGCCATGTCACTGTCTTCatttcaagaactgaaaataccatgtagaATA
TACTGTGTGCCTTCCTGCCTAGCCCCCCCCTTTCGACCACTTGTGTTTAA
GTTTCTGATATATGTTtgtatatcagagtttagatgcatttggtttgttt
tggtttatccGGACTCTTGAATCAGCCTCACTCTCATGTTCTATTTAAGG
CCCTTTAAGGCCTCAGTTTCTCCTCATGGTCccttttcagttcttcattt
cttagtgCTGACTGCTGTATTTTTTGCTCCTCCACCCTCCCCAGCATCTC
GGGAGCTTCCATTTACCTATTTTAAGCTTTGTTTATTTATATACCTGTCT
ATTGGTACATTTCGTGCTATTAGTTACTGccgtttttgtcattttaagcT
GTATACTCTTATTTGTTTGCATGTCATTATTTACTCCTGTTTTGTCATTT
ATCACCTATGCTATATTGTATACTATTATATGTTTGTATTGTGTGTTTCA
TTTACGCGTATCTGTGTACTCATTTATTTTATATTCTAGTTTTTATTCCT
GTACATATTTGCCATGTCACTGTCTTCatttcaagaactgaaaataccat
gtagaATATACTGTGTGCCTTCCTGCCTAGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026886XLOC_026886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043164-exon-sc0003969-1491911889:2916..3798TCONS_00043164-exon-sc0003969-1491911889:2916..3798Clytia hemisphaericaexon
TCONS_00043164-exon-sc0003969-1510915933:2916..3798TCONS_00043164-exon-sc0003969-1510915933:2916..3798Clytia hemisphaericaexon
TCONS_00043164-exon-sc0003969-1575043694:2916..3798TCONS_00043164-exon-sc0003969-1575043694:2916..3798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003969supercontigsc0003969:2916..3798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15442	0.259793	0.388528	0	0.227188	0.189933	0.546507	0.791009	0.9565	0.715708	0.430817	0.505857	0.731013	0.364178	0.431993	0.303332	0.654121	0.539824	0.645729	0.236104	0.559441	0.354658	0.317302	0.0898348	0.368898	0.677179	0.328831	1.00147	0.288082	0.310713
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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