TCONS_00043163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043163
Unique NameTCONS_00043163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043163 ID=TCONS_00043163|Name=TCONS_00043163|organism=Clytia hemisphaerica|type=transcript|length=672bp
GTTTTACTGACCAagtggtattttacagaccagaaagctccaacttttgc
atatttttacgatttttctACGGAAACGCCTCCAAACTTGGCTAATGCTA
ATAATACCATTGTCTTCTTTCATTTACAGAAAGGATAATAATAGGAGTGC
AAAGGACTTCATTGTAGGTTTACTGAATAGCAATACGACTGTCTTAAACA
AACCCGCCTAGCcgttttgattgaaattttatctttaaagtttTACATTT
ATACTGTAAAAAAACTACGAAATATATCAAAACTCTATGTAAATGATCAT
TCTTCAACATTGTCCTCGTCATCACTTAaatcatcttcttcttcatctga
TTCATCGAAAACATCGCCTTCGATATCGTCCTCGAAATCCTCGTCATCGT
CCTCATCTTCATCAGAAATGACAAAGTTATTCAAGCTGTCGGGAAACATT
TCGTCCGTCCAAAAGATGTCTCCATCATCAGTCCATCCGTGCTGCGAGGG
AGGGGGTAGTTCCACCATAGCTGTCCCAGTTGACTTCCAAATTTTTGCTA
CGTAATTTGCTCTTTTCAGGTGTTGTACGAAAGTTCTAAGGCAGGGTGGA
AGGAGGGAAAGGTCAGctacttgttttgatttcaaatgctttttttcgaa
aatctgaaaCCTTGCATCGTTT
Run BLAST on NCBI

protein sequence of TCONS_00043163-protein

>TCONS_00043163-protein ID=TCONS_00043163-protein|Name=TCONS_00043163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
NDARFQIFEKKHLKSKQVADLSLLPPCLRTFVQHLKRANYVAKIWKSTGT
AMVELPPPSQHGWTDDGDIFWTDEMFPDSLNNFVISDEDEDDDEDFEDDI
EGDVFDESDEEEDDLSDDEDNVEE
Run BLAST on NCBI

transcript from alignment at sc0003968:7715..8386

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043163 ID=TCONS_00043163|Name=TCONS_00043163|organism=Clytia hemisphaerica|type=transcript|length=672bp|location=Sequence derived from alignment at sc0003968:7715..8386 (Clytia hemisphaerica)
AAACGATGCAAGGtttcagattttcgaaaaaaagcatttgaaatcaaaac
aagtagCTGACCTTTCCCTCCTTCCACCCTGCCTTAGAACTTTCGTACAA
CACCTGAAAAGAGCAAATTACGTAGCAAAAATTTGGAAGTCAACTGGGAC
AGCTATGGTGGAACTACCCCCTCCCTCGCAGCACGGATGGACTGATGATG
GAGACATCTTTTGGACGGACGAAATGTTTCCCGACAGCTTGAATAACTTT
GTCATTTCTGATGAAGATGAGGACGATGACGAGGATTTCGAGGACGATAT
CGAAGGCGATGTTTTCGATGAAtcagatgaagaagaagatgattTAAGTG
ATGACGAGGACAATGTTGAAGAATGATCATTTACATAGAGTTTTGATATA
TTTCGTAGTTTTTTTACAGTATAAATGTAaaactttaaagataaaatttc
aatcaaaacgGCTAGGCGGGTTTGTTTAAGACAGTCGTATTGCTATTCAG
TAAACCTACAATGAAGTCCTTTGCACTCCTATTATTATCCTTTCTGTAAA
TGAAAGAAGACAATGGTATTATTAGCATTAGCCAAGTTTGGAGGCGTTTC
CGTagaaaaatcgtaaaaatatgcaaaagttggagctttctggtctgtaa
aataccactTGGTCAGTAAAAC

Coding sequence (CDS) from alignment at sc0003968:7715..8386

>TCONS_00043163 ID=TCONS_00043163|Name=TCONS_00043163|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0003968:7715..8386 (Clytia hemisphaerica)
AACGATGCAAGGtttcagattttcgaaaaaaagcatttgaaatcaaaaca
agtagCTGACCTTTCCCTCCTTCCACCCTGCCTTAGAACTTTCGTACAAC
ACCTGAAAAGAGCAAATTACGTAGCAAAAATTTGGAAGTCAACTGGGACA
GCTATGGTGGAACTACCCCCTCCCTCGCAGCACGGATGGACTGATGATGG
AGACATCTTTTGGACGGACGAAATGTTTCCCGACAGCTTGAATAACTTTG
TCATTTCTGATGAAGATGAGGACGATGACGAGGATTTCGAGGACGATATC
GAAGGCGATGTTTTCGATGAAtcagatgaagaagaagatgattTAAGTGA
TGACGAGGACAATGTTGAAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026885XLOC_026885Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043163-proteinTCONS_00043163-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043163-exon-sc0003968-1491911889:7715..8386TCONS_00043163-exon-sc0003968-1491911889:7715..8386Clytia hemisphaericaexon
TCONS_00043163-exon-sc0003968-1510915933:7715..8386TCONS_00043163-exon-sc0003968-1510915933:7715..8386Clytia hemisphaericaexon
TCONS_00043163-exon-sc0003968-1575043694:7715..8386TCONS_00043163-exon-sc0003968-1575043694:7715..8386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003968supercontigsc0003968:7715..8386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.178308	0.203578	0.20725	0.170642	0.991862	0.274665	1.42558	1.1209	0.625035	0.925995	0.984839	0.672889	0.225575	0.70979	0	0	0.14847	0.0815367	0.16291	0.0852367	0	0	0	0.0798753	1.1158	1.27211	0	0	0.0338869	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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