TCONS_00043162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043162
Unique NameTCONS_00043162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043162 ID=TCONS_00043162|Name=TCONS_00043162|organism=Clytia hemisphaerica|type=transcript|length=410bp
ATTTGTGTTTGTAGCTGAGTTTTGATTCCCACTTTCCGGGGTTGTTTTGC
TTAGCTGTTGGAACAACCCTTATTACTCTAGATTAGTTTATGGTGGAGAT
TTGACAGAATTATGTTATCATTATGTAACCATCATGTTGAGTTTGGGCGA
AGAGCAATCAAGGCTAGCTGCAAGAAAATATGCTCGTGTTATTCAAAAAT
TAGGGTTCCCAGCAAAGTTTGTCGACTTCAAAATACAGAACATAGTGGGT
AGTTGCGACGTACGGTTTCCCATCCGACTTGAAGGACTTGTATTACAACA
CAGTCAGTTCGCCAGGTATGTAACTCTATTTAAAACTGTTACACTTTTTT
cgcacagatatcttatataacgtactaaatttaaaacttttttgccTACC
CGAAGTCATG
Run BLAST on NCBI

transcript from alignment at sc0003968:19792..21369-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043162 ID=TCONS_00043162|Name=TCONS_00043162|organism=Clytia hemisphaerica|type=transcript|length=1578bp|location=Sequence derived from alignment at sc0003968:19792..21369- (Clytia hemisphaerica)
ATTTGTGTTTGTAGCTGAGTTTTGATTCCCACTTTCCGGGGTTGTTTTGC
TTAGCTGTTGGAACAACCCTTATTACTCTAGATTAGTTTATGGTGGAGAT
TTGACAGAATTATGTTATCATTATGTAACCATCATGTTGAGTTTGGGGTA
AAAGTCAAAAAGGTTTTTTAAACCCTGAATAACGTTCCCTGCTAGTTCAG
TAGAAAATCCCTATAAAATTTCTCGCGTTATAATAATCAAAGAAGATCAT
TTTTAAAAGTAGAATCCACTAAACAGTAACAGGCTTCATTGTTTTAAAAT
CAACTAGACTATAATTTTGTTTTCACTATCATTTTTTTAGCGAAGAGCAA
TCAAGGCTAGCTGCAAGAAAATATGCTCGTGTTATTCAAAAATTAGGGTT
CCCAGTAAGTACTCTTCCATACAGGATAGCCCACAAGACAAAAGGATTTT
CCAGAAAAAAAACTGTATACCCCCTGTTGAGGAGGTCTATTTCCGTTCCA
AGGGGGTAAGGTTTGATATGTGGCGGAATTCCCTAGTGAGATACATACAA
AAATCTGTCAAAAATAACTGGAATTCCATGGGGGTAGCTTTTTAAATCCT
ACTAAAATTCAGAATTTCAAAGAGGTTTAAACCTGAAATTGCCTGGGATT
CCAGGGGGTTACAGCATTTCCAGCCACAGAGGGATGGACCTCCTCAACAG
GGGTATACGGTTTTTTCTGGAAAAGCCCATTATTTTCTGATCAGCAAATA
ATTGTTTTCCATGAAGTTCTTTCATTTCATTTAAAACAATTAAAAGCATC
AGGTTTTACGTTTAATGTTTTAAAAGACTGCCAAACAAACAGCCCTCCCC
CAGTCACTTTTATTTTCAGAATTTATATTTTATATTCATTGCCTTCATTT
ATTAAAATTTGTTCCATTCGTCCTCTAATAGACCTTTTCATAAATGACGA
AACGAACATACTTGCCTCGTTTTGAAATTATTGCCACGGTGATTAACTCC
CAGCGGATTTTATTAAAACTACTTCCTATTCAAAAAAAAACATTTAATGT
CTCAAGAGACATAATCACTATAGTAATTGTTTGAATACGAGGCAAGTGCT
GTTCGTGACTTAATTTATGAAAAGGTCTATTGCGGACCTAATTATTTCAA
ATAACTTATTCCCTAGTGTCTGTCTTCTTTGGCTGAATGGAATTATTGAT
AAAGTAGAAACATGGTTTTTTTTATTATTATTATTATTACAACGAATACA
AAGTTCAGGCACGCCGTGGACCTCTAGAACTGATCTTTGTTTATTTACAA
TAAATAGCGCAGTTCATGTTTTGCCCATGCTTAGTTTAAATTATCTTTAA
ACGATTTTATTGAAGGTTTTCTTTTGTAGGCAAAGTTTGTCGACTTCAAA
ATACAGAACATAGTGGGTAGTTGCGACGTACGGTTTCCCATCCGACTTGA
AGGACTTGTATTACAACACAGTCAGTTCGCCAGGTATGTAACTCTATTTA
AAACTGTTACACTTTTTTCGCACAGATATCTTATATAACGTACTAAATTT
AAAACTTTTTTGCCTACCCGAAGTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026884XLOC_026884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043162-exon-sc0003968-1575043694:21223..21369TCONS_00043162-exon-sc0003968-1575043694:21223..21369Clytia hemisphaericaexon
TCONS_00043162-exon-sc0003968-1575043694:20966..21029TCONS_00043162-exon-sc0003968-1575043694:20966..21029Clytia hemisphaericaexon
TCONS_00043162-exon-sc0003968-1575043694:19792..19990TCONS_00043162-exon-sc0003968-1575043694:19792..19990Clytia hemisphaericaexon
TCONS_00043162-exon-sc0003968-1510915933:21223..21369TCONS_00043162-exon-sc0003968-1510915933:21223..21369Clytia hemisphaericaexon
TCONS_00043162-exon-sc0003968-1510915933:20966..21029TCONS_00043162-exon-sc0003968-1510915933:20966..21029Clytia hemisphaericaexon
TCONS_00043162-exon-sc0003968-1510915933:19792..19990TCONS_00043162-exon-sc0003968-1510915933:19792..19990Clytia hemisphaericaexon
TCONS_00043162-exon-sc0003968-1491911889:21223..21369TCONS_00043162-exon-sc0003968-1491911889:21223..21369Clytia hemisphaericaexon
TCONS_00043162-exon-sc0003968-1491911889:20966..21029TCONS_00043162-exon-sc0003968-1491911889:20966..21029Clytia hemisphaericaexon
TCONS_00043162-exon-sc0003968-1491911889:19792..19990TCONS_00043162-exon-sc0003968-1491911889:19792..19990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003968supercontigsc0003968:19792..21369 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.3993	14.6452	43.2129	55.8846	20.9938	15.9655	20.1791	23.9536	18.7007	16.6391	13.4944	12.4441	13.4051	12.8535	10.3338	14.3521	13.1739	13.4931	5.9789	7.04253	13.0339	8.73825	15.5923	13.1828	22.5513	22.1561	8.1259	6.9694	9.22511	9.71727
Blast
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BLAST of TCONS_00043162 vs. Swiss-Prot (Human)
Match: TBP (TATA-box-binding protein OS=Homo sapiens GN=TBP PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.526e-29
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 2 
Query:  149 EEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVRFPIRLEGLVLQHSQFARY 319
            EEQSRLAARKYARV+QKLGFPAKF+DFKIQN+VGSCDV+FPIRLEGLVL H QF+ Y
Sbjct:  227 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 283
The following BLAST results are available for this feature:
BLAST of TCONS_00043162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBP1.526e-2985.96TATA-box-binding protein OS=Homo sapiens GN=TBP PE... [more]
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