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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043153 ID=TCONS_00043153|Name=TCONS_00043153|organism=Clytia hemisphaerica|type=transcript|length=1439bp
TGGGATTTGAAGATGTTATGTTATGTCAATTCCCAAACTAATCTCTCCAA
TTCTTGTCAACAGTTTATGGATCTTTATCAAAATTAATTGTTTTGAGCTC
AAGTACACAAATATTTTTACATATAGTATACATAAGCCTCTTTTGAAGCG
TTTGATAGATATAGAATTTCCATCTTGCTTCGAGAAGTGAAAGAGCAAAA
CAAGGAGTGGCATAAGAGAAACATCAAATATATTGCTTATCAAAGATGAA
ATCTCTTCTACTCTATCTGATACTTGCGGTCTTGGTTGGCAATGCAAACT
CGAGCAGATTCTATGCTGTGGTCgaaaaaccccaaaaatatTGCACCTTC
GAAGGATATGTTCCCGGAGGCAATAAGATTACGGTGGCAAAAGTCATTGC
TCCTGTGGCGAAAATGCAGAAGAATGTGTTCAGTGGGCTTGCTGgcaatc
tgggaaaagcaagtGTGGGTGCTCAACATTCAACCATGTTATTGAAAGGT
TTTGGAAAGCTAGCGAACATTGCGCCGAAGTTGGGTCCAGCTCTCGGTTT
GTTTGGTGTTGGATTCTCCCTTGTCAAATCGTTTATTGAACCCTCACCAC
AAGATATTTTAGATCAAGCCAATAAAGCTATCGCTGAGTTGACCAACGAG
GTAAAGTTTGCAGTAAAccctcgcttattcgaacttctattattcgaatt
tttttctataattcgaatatgTTTCTAGTCCCCTACAAGTAGAATCTCTT
TTAAAATCCTTCAACAACTATGATCCCTGTTCGAGTAGGAATCAGAGAGT
CCACGTTCTATAACGTTAAGTAAGGGGTCAACATTCCATTTTAAGATATT
TCGACATTTTTTAGAGAGGGAGGGCAGGCAACTGTTTTTATATAATTAGT
TAAAATTTGACTTTGTTAGAAAAATGAATGATAGAGAAAAAGCTGACATT
AATGGAAGAAAAGCAGTGGTATTTATTTGTATCTCTGTTCGACTTAGACG
CTNTGTTAGAAAAATGAATGATAGAGAAAAAGCTGACATTAATGGAAGAA
AAGCAGTGGTATTTATTTGTATCTCTGTTCGACTTAGACGCTTTGAAAAT
ATCAAGATGGCTAACACTCTCCCAACTAGTCTAGATGATATTTCTTAAAC
ATTCTTGACTTTGGGCCGTTGAACTTTGATCGAGCGCGCGATGGAATCCT
CAGTTTTTGTACTTTTATGATATGGAGTAGGAAATCTTTCGAAAGAAGTC
TTTTTAAAGCTCTCTTTCCACCGAGTTTGTCTCTTCTCatttttaaacca
aaatttggtacTTCTAGGGGTAAAGTTCTGGGGTCTGGTCTGCACATGTC
CGTCCTTCAGAAAACCTAGTGGCAACCCTGTTCTGTTGTTCAACTTCAGG
TTAACAGTAGATTGGATGAAATGAAAGGGTATGTCGAAG Run BLAST on NCBI transcript from alignment at sc0003960:1..2085- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043153 ID=TCONS_00043153|Name=TCONS_00043153|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at sc0003960:1..2085- (Clytia hemisphaerica)
TGGGATTTGAAGATGTTATGTTATGTCAATTCCCAAACTAATCTCTCCAA
TTCTTGTCAACAGTTTATGGATCTTTATCAAAATTAATTGTTTTGAGCTC
AAGTACACAAATATTTTTACATATAGTATACATAAGCCTCTTTTGAAGCG
TTTGATAGATATAGAATTTCCATCTTGCTTCGAGAAGTGAAAGAGCAAAA
CAAGGAGTGGCATAAGAGAAACATCAAATATATTGGTAAGTCCTTGAAAC
TGAGCTACTGTAGTATTGCTTGACTGAAAATCTTGTTACATGTGTATACG
AATAATATTAATTCACATCGATTTTTCGACAGCTCACCCTTATAATCTAA
TCTGGAATTTTCCTTTGCTGGAATAAAATCAATATAGAAGCATGTTGAAA
AGGAAATCTGAAACTGGAAATTAAATCTTTAAACTTATTTCAGCTTATCA
AAGATGAAATCTCTTCTACTCTATCTGATACTTGCGGTCTTGGTTGGCAA
TGCAAACTCGAGCAGATTCTATGCTGTGGTCGAAAAACCCCAAAAATATT
GCACCTTCGAAGGATATGTTCCCGGAGGCAATAAGATTACGGTGGCAAAA
GTCATTGCTCCTGTGGCGAAAATGCAGAAGAATGTGTTCAGTGGGCTTGC
TGGCAATCTGGGAAAAGCAAGTGTGGGTGCTCAACATTCAACCATGTTAT
TGAAAGGTTTTGGAAAGCTAGGTAAATTTAGAACATTTTCATTGATATTT
TAGTCTTTTAACTTTCTCTCAATATTTATACCGTAGAAGGCTCGTGTTTT
TCTTTTTGCAAAGGTTGAAAAAAGCGCATTCTTGTCTACAAGGCCCTCAG
CGGTTTGCGTGAATGCGTGAATTTCGAAAAAACTGAATGATTGCGTGAAT
TGATGTTCTGCTAAGGGGCCTCCTACAACGACTCAACCTTTCAGTGTCGA
TTATCACTAAGTGAATCACTTTCTGTCCAAATGATTTTCAGGGCCACATA
CCTTGCAGTGCGTTGCTCCTGTTTCATCTGCCTTACCCTCACTGGGATCC
CTTTTTCGTCGTGCTAGGAAAAAAATGTTAGCCTATTATAAAAGTGTAAA
GAAGACAAAACGAACAGCGTATCTTAAAAATTCTTTCTTTCCAATCATTC
TTTCTGTAGCGAACATTGCGCCGAAGTTGGGTCCAGCTCTCGGTTTGTTT
GGTGTTGGATTCTCCCTTGTCAAATCGTTTATTGAACCCTCACCACAAGA
TATTTTAGATCAAGCCAATAAAGCTATCGCTGAGTTGACCAACGAGGTAA
AGTTTGCAGTAAACCCTCGCTTATTCGAACTTCTATTATTCGAATTTTTT
TCTATAATTCGAATATGTTTCTAGTCCCCTACAAGTAGAATCTCTTTTAA
AATCCTTCAACAACTATGATCCCTGTTCGAGTAGGAATCAGAGAGTCCAC
GTTCTATAACGTTAAGTAAGGGGTCAACATTCCATTTTAAGATATTTCGA
CATTTTTTAGAGAGGGAGGGCAGGCAACTGTTTTTATATAATTAGTTAAA
ATTTGACTTTGTTAGAAAAATGAATGATAGAGAAAAAGCTGACATTAATG
GAAGAAAAGCAGTGGTATTTATTTGTATCTCTGTTCGACTTAGACGCTNT
GTTAGAAAAATGAATGATAGAGAAAAAGCTGACATTAATGGAAGAAAAGC
AGTGGTATTTATTTGTATCTCTGTTCGACTTAGACGCTTTGAAAATATCA
AGATGGCTAACACTCTCCCAACTAGTCTAGATGATATTTCTTAAACATTC
TTGACTTTGGGCCGTTGAACTTTGATCGAGCGCGCGATGGAATCCTCAGT
TTTTGTACTTTTATGATATGGAGTAGGAAATCTTTCGAAAGAAGTCTTTT
TAAAGCTCTCTTTCCACCGAGTTTGTCTCTTCTCATTTTTAAACCAAAAT
TTGGTACTTCTAGGGGTAAAGTTCTGGGGTCTGGTCTGCACATGTCCGTC
CTTCAGAAAACCTAGTGGCAACCCTGTTCTGTTGTTCAACTTCAGGTTAA
CAGTAGATTGGATGAAATGAAAGGGTATGTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043153-exon-sc0003960-1575043694:1851..2085 | TCONS_00043153-exon-sc0003960-1575043694:1851..2085 | Clytia hemisphaerica | exon |
| TCONS_00043153-exon-sc0003960-1575043694:1365..1642 | TCONS_00043153-exon-sc0003960-1575043694:1365..1642 | Clytia hemisphaerica | exon |
| TCONS_00043153-exon-sc0003960-1575043694:1..926 | TCONS_00043153-exon-sc0003960-1575043694:1..926 | Clytia hemisphaerica | exon |
| TCONS_00043153-exon-sc0003960-1510915933:1851..2085 | TCONS_00043153-exon-sc0003960-1510915933:1851..2085 | Clytia hemisphaerica | exon |
| TCONS_00043153-exon-sc0003960-1510915933:1365..1642 | TCONS_00043153-exon-sc0003960-1510915933:1365..1642 | Clytia hemisphaerica | exon |
| TCONS_00043153-exon-sc0003960-1510915933:1..926 | TCONS_00043153-exon-sc0003960-1510915933:1..926 | Clytia hemisphaerica | exon |
| TCONS_00043153-exon-sc0003960-1491911889:1851..2085 | TCONS_00043153-exon-sc0003960-1491911889:1851..2085 | Clytia hemisphaerica | exon |
| TCONS_00043153-exon-sc0003960-1491911889:1365..1642 | TCONS_00043153-exon-sc0003960-1491911889:1365..1642 | Clytia hemisphaerica | exon |
| TCONS_00043153-exon-sc0003960-1491911889:1..926 | TCONS_00043153-exon-sc0003960-1491911889:1..926 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003960 | supercontig | sc0003960:1..2085 - |
Blast
The following BLAST results are available for this feature:
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