TCONS_00043151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043151
Unique NameTCONS_00043151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043151 ID=TCONS_00043151|Name=TCONS_00043151|organism=Clytia hemisphaerica|type=transcript|length=305bp
CTTTACACCAAGGAAAAGTACCAAATGATTGGAAACAAGCTAATATCACC
CCGCTATACAAAGGTGGAAACAAAAATCGTTCAAAGCCTAAGAACTATCG
ACCCGTTAGTTTGACTTCTACAACTTGTAAAATCATGGAACACATCATAC
ATAGTCACGTAATGTCTCATTTTGACCGAACAAAGATGCTCTCCAATAGC
CAACACGGATTCAGAAAACATAGATCTTGTGAAACCCAACTGATCCAAAC
AGTTCATGACATTGCTAAAGCAATTAATGACAAAGAACAAATTGATTCCA
TCTNN
Run BLAST on NCBI

protein sequence of TCONS_00043151-protein

>TCONS_00043151-protein ID=TCONS_00043151-protein|Name=TCONS_00043151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
LHQGKVPNDWKQANITPLYKGGNKNRSKPKNYRPVSLTSTTCKIMEHIIH
SHVMSHFDRTKMLSNSQHGFRKHRSCETQLIQTVHDIAKAINDKEQIDSI
X
Run BLAST on NCBI

transcript from alignment at sc0003959:10028..10332

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043151 ID=TCONS_00043151|Name=TCONS_00043151|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0003959:10028..10332 (Clytia hemisphaerica)
NNAGATGGAATCAATTTGTTCTTTGTCATTAATTGCTTTAGCAATGTCAT
GAACTGTTTGGATCAGTTGGGTTTCACAAGATCTATGTTTTCTGAATCCG
TGTTGGCTATTGGAGAGCATCTTTGTTCGGTCAAAATGAGACATTACGTG
ACTATGTATGATGTGTTCCATGATTTTACAAGTTGTAGAAGTCAAACTAA
CGGGTCGATAGTTCTTAGGCTTTGAACGATTTTTGTTTCCACCTTTGTAT
AGCGGGGTGATATTAGCTTGTTTCCAATCATTTGGTACTTTTCCTTGGTG
TAAAG

Coding sequence (CDS) from alignment at sc0003959:10028..10332

>TCONS_00043151 ID=TCONS_00043151|Name=TCONS_00043151|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0003959:10028..10332 (Clytia hemisphaerica)
NNAGATGGAATCAATTTGTTCTTTGTCATTAATTGCTTTAGCAATGTCAT
GAACTGTTTGGATCAGTTGGGTTTCACAAGATCTATGTTTTCTGAATCCG
TGTTGGCTATTGGAGAGCATCTTTGTTCGGTCAAAATGAGACATTACGTG
ACTATGTATGATGTGTTCCATGATTTTACAAGTTGTAGAAGTCAAACTAA
CGGGTCGATAGTTCTTAGGCTTTGAACGATTTTTGTTTCCACCTTTGTAT
AGCGGGGTGATATTAGCTTGTTTCCAATCATTTGGTACTTTTCCTTGGTG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026874XLOC_026874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043151-exon-sc0003959-1491911889:10028..10332TCONS_00043151-exon-sc0003959-1491911889:10028..10332Clytia hemisphaericaexon
TCONS_00043151-exon-sc0003959-1510915933:10028..10332TCONS_00043151-exon-sc0003959-1510915933:10028..10332Clytia hemisphaericaexon
TCONS_00043151-exon-sc0003959-1575043694:10028..10332TCONS_00043151-exon-sc0003959-1575043694:10028..10332Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043151-proteinTCONS_00043151-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003959supercontigsc0003959:10028..10332 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58489	1.44038	2.06415	6.0383	2.98788	3.93511	1.42426	2.2223	0	0.971095	0.37412	1.11593	1.47354	1.27524	0.951019	1.38847	1.66326	1.13652	0	1.64307	1.78515	1.29864	1.58242	0.292242	0.396468	0	5.56976	1.08076	3.00413	3.82929
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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