TCONS_00043146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043146
Unique NameTCONS_00043146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043146 ID=TCONS_00043146|Name=TCONS_00043146|organism=Clytia hemisphaerica|type=transcript|length=255bp
GTCCATCTGTCCCCTCTTAGAAAGGTtctaacgtttttattggcacgcgc
acagaaaagaaaaaaataattaggtgaagagaaattttttattttgcttt
gcaaaaaagtggaggggccatggccccccccggcccccccggTGGCGCGG
GCCCTGGGTGTTCCCATCTTTGTGTGTGGGTTGATTGACATATTGGGACA
TGAACAACTCGTTGCAAAATCGATTTAGATCATTCAGCATTGATCTTTCT
TCCAT
Run BLAST on NCBI

transcript from alignment at sc0003956:5212..5466

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043146 ID=TCONS_00043146|Name=TCONS_00043146|organism=Clytia hemisphaerica|type=transcript|length=255bp|location=Sequence derived from alignment at sc0003956:5212..5466 (Clytia hemisphaerica)
ATGGAAGAAAGATCAATGCTGAATGATCTAAATCGATTTTGCAACGAGTT
GTTCATGTCCCAATATGTCAATCAACCCACACACAAAGATGGGAACACCC
AGGGCCCGCGCCAccgggggggccggggggggccatggcccctccacttt
tttgcaaagcaaaataaaaaatttctcttcacctaattatttttttcttt
tctgtgcgcgtgccaataaaaacgttagaACCTTTCTAAGAGGGGACAGA
TGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026869XLOC_026869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043146-exon-sc0003956-1491911889:5212..5466TCONS_00043146-exon-sc0003956-1491911889:5212..5466Clytia hemisphaericaexon
TCONS_00043146-exon-sc0003956-1510915933:5212..5466TCONS_00043146-exon-sc0003956-1510915933:5212..5466Clytia hemisphaericaexon
TCONS_00043146-exon-sc0003956-1575043694:5212..5466TCONS_00043146-exon-sc0003956-1575043694:5212..5466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003956supercontigsc0003956:5212..5466 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.95177	1.67294	5.49467	2.00656	3.64108	4.58851	4.7256	5.89588	3.85443	4.32285	4.35818	5.04198	6.36404	2.415	3.98273	2.12848	2.75936	3.76754	1.67307	5.97808	2.12544	0	1.75298	3.49913	4.05936	2.51347	4.02249	2.03715	1.44108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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