TCONS_00043145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043145
Unique NameTCONS_00043145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043145 ID=TCONS_00043145|Name=TCONS_00043145|organism=Clytia hemisphaerica|type=transcript|length=490bp
aaaagtcaGAGGGCACACAATCAACCAAAACAAGCTACTCTTTCTACAGG
ATTGCGGAGGAAGACAAAAACGAAGCAGAGAGACTTTTGGAGTCAGCGAA
GAGAACATTAACAAAATCATTTGACATGACGGCTCGATACATCCTCTTCA
TAATGTTGCTTTACTTGTTCATTCTTCGAAGAAGCAATGCTTCCAATTTA
GATGAAACAATCGAGACTAATTGTGAGGAGAAAGCAAAACAACAATGTCA
CAAAGTCCAACACCACGCAGTAAAGTATTTCGAGTGTTGTCAAAACAAAA
TGGAATTCTGCGTCCAAATTTCATTAATCCTAGACAACCGCCATCGCTAT
ATCGGTCAAAGTATTGTTTGTACTTTGGAAAGATCGCTGATCGAATTTTG
CCGAGACGAAGATGATTGCCAAACAGTAGAGATTGAGTATCGAGCGTGCC
AAGCTGTATAAAAGTATGGTGTTTGAATGAATGTGAAAAA
Run BLAST on NCBI

transcript from alignment at sc0003955:5193..5750+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043145 ID=TCONS_00043145|Name=TCONS_00043145|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0003955:5193..5750+ (Clytia hemisphaerica)
aaaagtcaGAGGGCACACAATCAACCAAAACAAGCTACTCTTTCTACAGG
ATTGCGGAGGAAGACAAAAACGAAGCAGAGAGACTTTTGGAGTCAGCGAA
GAGAACATTAACAAAATCATTTGACATGACGGCTCGATNGAAGCAGAGAG
ACTTTTGGAGTCAGCGAAGAGAACATTAACAAAATCATTTGACATGACGG
CTCGATACATCCTCTTCATAATGTTGCTTTACTTGTTCATTCTTCGAAGA
AGCAATGCTTCCAATTTAGATGAAACAATCGAGACTAATTGTGAGGAGAA
AGCAAAACAACAATGTCACAAAGTCCAACACCACGCAGTAAAGTATTTCG
AGTGTTGTCAAAACAAAATGGAATTCTGCGTCCAAATTTCATTAATCCTA
GACAACCGCCATCGCTATATCGGTCAAAGTATTGTTTGTACTTTGGAAAG
ATCGCTGATCGAATTTTGCCGAGACGAAGATGATTGCCAAACAGTAGAGA
TTGAGTATCGAGCGTGCCAAGCTGTATAAAAGTATGGTGTTTGAATGAAT
GTGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026868XLOC_026868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043145-exon-sc0003955-1491911889:5193..5298TCONS_00043145-exon-sc0003955-1491911889:5193..5298Clytia hemisphaericaexon
TCONS_00043145-exon-sc0003955-1510915933:5193..5298TCONS_00043145-exon-sc0003955-1510915933:5193..5298Clytia hemisphaericaexon
TCONS_00043145-exon-sc0003955-1575043694:5193..5298TCONS_00043145-exon-sc0003955-1575043694:5193..5298Clytia hemisphaericaexon
TCONS_00043145-exon-sc0003955-1491911889:5367..5750TCONS_00043145-exon-sc0003955-1491911889:5367..5750Clytia hemisphaericaexon
TCONS_00043145-exon-sc0003955-1510915933:5367..5750TCONS_00043145-exon-sc0003955-1510915933:5367..5750Clytia hemisphaericaexon
TCONS_00043145-exon-sc0003955-1575043694:5367..5750TCONS_00043145-exon-sc0003955-1575043694:5367..5750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003955supercontigsc0003955:5193..5750 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15824	0.369356	0.571811	0.175287	1.3621	0.941805	34.226	33.5352	72.7444	52.3361	21.1177	53.8539	0	0	0	0	0	0	0	0	0.122071	0.178626	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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