TCONS_00043144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043144
Unique NameTCONS_00043144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043144 ID=TCONS_00043144|Name=TCONS_00043144|organism=Clytia hemisphaerica|type=transcript|length=565bp
TTAATTTCAAGTACTTAATTTATTCAAAGAAAAGTACTCATGGAAAGAAG
CGATcgaagaaatatcaaaataagaaaaagtcaGAGGGCACACAATCAAC
CAAAACAAGCTACTCTTTCTACAGGATTGCGGAGGAAGACAAAAACGAAG
CAGAGAGACTTTTGGAGTCAGCGAAGAGAACATTAACAAAATCATTTGAC
ATGACGGCTCGATACATCCTCTTCATAATGTTGCTTTACTTGTTCATTCT
TCGAAGAAGCAATGCTTCCAATTTAGATGAAACAATCGAGACTAATTGTG
AGGAGAAAGCAAAACAACAATGTCACAAAGTCCAACACCACGCAGTAAAG
TATTTCGAGTGTTGTCAAAACAAAATGGAATTCTGCGTCCAAATTTCATT
AATCCTAGACAACCGCCATCGCTATATCGGTCAAAGTATTGTTTGTACTT
TGGAAAGATCGCTGATCGAATTTTGCCGAGACGAAGATGATTGCCAAACA
GTAGAGATTGAGTATCGAGCGTGCCAAGCTGTATAAAAGTATGGTGTTTG
AATGAATGTGAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00043144-protein

>TCONS_00043144-protein ID=TCONS_00043144-protein|Name=TCONS_00043144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
NFKYLIYSKKSTHGKKRSKKYQNKKKSEGTQSTKTSYSFYRIAEEDKNEA
ERLLESAKRTLTKSFDMTARYILFIMLLYLFILRRSNASNLDETIETNCE
EKAKQQCHKVQHHAVKYFECCQNKMEFCVQISLILDNRHRYIGQSIVCTL
ERSLIEFCRDEDDCQTVEIEYRACQAV
Run BLAST on NCBI

transcript from alignment at sc0003955:5118..5750+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043144 ID=TCONS_00043144|Name=TCONS_00043144|organism=Clytia hemisphaerica|type=transcript|length=633bp|location=Sequence derived from alignment at sc0003955:5118..5750+ (Clytia hemisphaerica)
TTAATTTCAAGTACTTAATTTATTCAAAGAAAAGTACTCATGGAAAGAAG
CGATcgaagaaatatcaaaataagaaaaagtcaGAGGGCACACAATCAAC
CAAAACAAGCTACTCTTTCTACAGGATTGCGGAGGAAGACAAAAACGAAG
CAGAGAGACTTTTGGAGTCAGCGAAGAGAACATTAACAAAATCATTTGAC
ATGACGGCTCGATNGAAGCAGAGAGACTTTTGGAGTCAGCGAAGAGAACA
TTAACAAAATCATTTGACATGACGGCTCGATACATCCTCTTCATAATGTT
GCTTTACTTGTTCATTCTTCGAAGAAGCAATGCTTCCAATTTAGATGAAA
CAATCGAGACTAATTGTGAGGAGAAAGCAAAACAACAATGTCACAAAGTC
CAACACCACGCAGTAAAGTATTTCGAGTGTTGTCAAAACAAAATGGAATT
CTGCGTCCAAATTTCATTAATCCTAGACAACCGCCATCGCTATATCGGTC
AAAGTATTGTTTGTACTTTGGAAAGATCGCTGATCGAATTTTGCCGAGAC
GAAGATGATTGCCAAACAGTAGAGATTGAGTATCGAGCGTGCCAAGCTGT
ATAAAAGTATGGTGTTTGAATGAATGTGAAAAA

Coding sequence (CDS) from alignment at sc0003955:5118..5750+

>TCONS_00043144 ID=TCONS_00043144|Name=TCONS_00043144|organism=Clytia hemisphaerica|type=CDS|length=1068bp|location=Sequence derived from alignment at sc0003955:5118..5750+ (Clytia hemisphaerica)
AATTTCAAGTACTTAATTTATTCAAAGAAAAGTACTCATGGAAAGAAGCG
ATcgaagaaatatcaaaataagaaaaagtcaGAGGGCACACAATCAACCA
AAACAAGCTACTCTTTCTACAGGATTGCGGAGGAAGACAAAAACGAAGCA
GAGAGACTTTTGGAGTCAGCGAAGAGAACATTAACAAAATCATTTGACAT
GACGGCTCGATACATCCTCTTCATAATGTTGCTTTACTTGTTCATTCTTC
GAAGAAGCAATGCTTCCAATTTAGATGAAACAATCGAGACTAATTGTGAG
GAGAAAGCAAAACAACAATGTCACAAAGTCCAACACCACGCAGTAAAGTA
TTTCGAGTGTTGTCAAAACAAAATGGAATTCTGCGTCCAAATTTCATTAA
TCCTAGACAACCGCCATCGCTATATCGGTCAAAGTATTGTTTGTACTTTG
GAAAGATCGCTGATCGAATTTTGCCGAGACGAAGATGATTGCCAAACAGT
AGAGATTGAGTATCGAGCGTGCCAAGCTGTATAAAATTTCAAGTACTTAA
TTTATTCAAAGAAAAGTACTCATGGAAAGAAGCGATcgaagaaatatcaa
aataagaaaaagtcaGAGGGCACACAATCAACCAAAACAAGCTACTCTTT
CTACAGGATTGCGGAGGAAGACAAAAACGAAGCAGAGAGACTTTTGGAGT
CAGCGAAGAGAACATTAACAAAATCATTTGACATGACGGCTCGATACATC
CTCTTCATAATGTTGCTTTACTTGTTCATTCTTCGAAGAAGCAATGCTTC
CAATTTAGATGAAACAATCGAGACTAATTGTGAGGAGAAAGCAAAACAAC
AATGTCACAAAGTCCAACACCACGCAGTAAAGTATTTCGAGTGTTGTCAA
AACAAAATGGAATTCTGCGTCCAAATTTCATTAATCCTAGACAACCGCCA
TCGCTATATCGGTCAAAGTATTGTTTGTACTTTGGAAAGATCGCTGATCG
AATTTTGCCGAGACGAAGATGATTGCCAAACAGTAGAGATTGAGTATCGA
GCGTGCCAAGCTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026868XLOC_026868Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043144-proteinTCONS_00043144-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043144-exon-sc0003955-1491911889:5118..5317TCONS_00043144-exon-sc0003955-1491911889:5118..5317Clytia hemisphaericaexon
TCONS_00043144-exon-sc0003955-1510915933:5118..5317TCONS_00043144-exon-sc0003955-1510915933:5118..5317Clytia hemisphaericaexon
TCONS_00043144-exon-sc0003955-1575043694:5118..5317TCONS_00043144-exon-sc0003955-1575043694:5118..5317Clytia hemisphaericaexon
TCONS_00043144-exon-sc0003955-1491911889:5386..5750TCONS_00043144-exon-sc0003955-1491911889:5386..5750Clytia hemisphaericaexon
TCONS_00043144-exon-sc0003955-1510915933:5386..5750TCONS_00043144-exon-sc0003955-1510915933:5386..5750Clytia hemisphaericaexon
TCONS_00043144-exon-sc0003955-1575043694:5386..5750TCONS_00043144-exon-sc0003955-1575043694:5386..5750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003955supercontigsc0003955:5118..5750 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.473037	0	0	0.523997	0	0	18.8531	30.7452	27.9033	19.7502	13.419	20.4776	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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