TCONS_00043126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043126
Unique NameTCONS_00043126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043126 ID=TCONS_00043126|Name=TCONS_00043126|organism=Clytia hemisphaerica|type=transcript|length=475bp
TGGAAGGTTGTTTTGGAGCTTGGTTGGACGCAATCTGTATGGCAGCCTTT
TGCTGATGCACCGCCATTTCAGTTTCAAGGAAATCAATCATTTGCTTCCA
TTTTCTTTTCCCAGTTTCTGGAGATTGGCACGAAAGTTGCAGCCATCTCA
TCATTCTGCTATCTCCTAGATTGCTGACGATTTGAGAAAACGCGTTACTa
taaaaaagttcattttcaatATGGTGTTTTGCAGCAAGTTGCATGAGATC
TCTCATTGTATTAGTTATTTTACTCAGAGAGTCTATGATTTTAATTGAAT
CTTTCAGTAACTTTGGATTCTTTGTCAATTCCATGAGTTCGTAGAGTTTG
TGTTGTAAAAGTATCTCCTTATCACCGAAAATTTGTTTCAGGCGATCCCA
TATGTCTTTGATGTTGTCAAGACTTTTAACAATAGCCAAGGCTTGTTTAT
CGAGGTAATTGTTCTTGAGAAACTC
Run BLAST on NCBI

protein sequence of TCONS_00043126-protein

>TCONS_00043126-protein ID=TCONS_00043126-protein|Name=TCONS_00043126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
EFLKNNYLDKQALAIVKSLDNIKDIWDRLKQIFGDKEILLQHKLYELMEL
TKNPKLLKDSIKIIDSLSKITNTMRDLMQLAAKHHIENELFYSNAFSQIV
SNLGDSRMMRWLQLSCQSPETGKRKWKQMIDFLETEMAVHQQKAAIQIAS
NQAPKQPS
Run BLAST on NCBI

transcript from alignment at sc0003939:4652..5126

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043126 ID=TCONS_00043126|Name=TCONS_00043126|organism=Clytia hemisphaerica|type=transcript|length=475bp|location=Sequence derived from alignment at sc0003939:4652..5126 (Clytia hemisphaerica)
GAGTTTCTCAAGAACAATTACCTCGATAAACAAGCCTTGGCTATTGTTAA
AAGTCTTGACAACATCAAAGACATATGGGATCGCCTGAAACAAATTTTCG
GTGATAAGGAGATACTTTTACAACACAAACTCTACGAACTCATGGAATTG
ACAAAGAATCCAAAGTTACTGAAAGATTCAATTAAAATCATAGACTCTCT
GAGTAAAATAACTAATACAATGAGAGATCTCATGCAACTTGCTGCAAAAC
ACCATattgaaaatgaacttttttatAGTAACGCGTTTTCTCAAATCGTC
AGCAATCTAGGAGATAGCAGAATGATGAGATGGCTGCAACTTTCGTGCCA
ATCTCCAGAAACTGGGAAAAGAAAATGGAAGCAAATGATTGATTTCCTTG
AAACTGAAATGGCGGTGCATCAGCAAAAGGCTGCCATACAGATTGCGTCC
AACCAAGCTCCAAAACAACCTTCCA

Coding sequence (CDS) from alignment at sc0003939:4652..5126

>TCONS_00043126 ID=TCONS_00043126|Name=TCONS_00043126|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0003939:4652..5126 (Clytia hemisphaerica)
GAGTTTCTCAAGAACAATTACCTCGATAAACAAGCCTTGGCTATTGTTAA
AAGTCTTGACAACATCAAAGACATATGGGATCGCCTGAAACAAATTTTCG
GTGATAAGGAGATACTTTTACAACACAAACTCTACGAACTCATGGAATTG
ACAAAGAATCCAAAGTTACTGAAAGATTCAATTAAAATCATAGACTCTCT
GAGTAAAATAACTAATACAATGAGAGATCTCATGCAACTTGCTGCAAAAC
ACCATattgaaaatgaacttttttatAGTAACGCGTTTTCTCAAATCGTC
AGCAATCTAGGAGATAGCAGAATGATGAGATGGCTGCAACTTTCGTGCCA
ATCTCCAGAAACTGGGAAAAGAAAATGGAAGCAAATGATTGATTTCCTTG
AAACTGAAATGGCGGTGCATCAGCAAAAGGCTGCCATACAGATTGCGTCC
AACCAAGCTCCAAAACAACCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026855XLOC_026855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043126-exon-sc0003939-1491911889:4652..5126TCONS_00043126-exon-sc0003939-1491911889:4652..5126Clytia hemisphaericaexon
TCONS_00043126-exon-sc0003939-1510915933:4652..5126TCONS_00043126-exon-sc0003939-1510915933:4652..5126Clytia hemisphaericaexon
TCONS_00043126-exon-sc0003939-1575043694:4652..5126TCONS_00043126-exon-sc0003939-1575043694:4652..5126Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043126-proteinTCONS_00043126-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003939supercontigsc0003939:4652..5126 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01253	1.23023	0.898801	1.57369	0.721858	0	0.522601	0.368019	0.257058	0.290415	0.33436	0.33724	0.539478	0.619802	0.350248	0.557345	0	0.242211	0.21633	1.18771	0.703224	0.427654	0	0.369818	0	1.02657	0	0.67318	0.744606	0.588198
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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