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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043117 ID=TCONS_00043117|Name=TCONS_00043117|organism=Clytia hemisphaerica|type=transcript|length=703bp
ACTTTCCAATTTTTAACAATCGAAATGATTAACAAGGCTAAGAAAAATGA
AGGCTTCATTGATCAGACCGAGTTTAAAACATCTAGTACTTACATATTTG
ATACCTTAATCTTAACCTCCGACATTATAGATATCATCGACTTGTATATC
TTTAACATCCGTCCTCGACTAGGTGCAAAGTGTGATTATCTTTTAGTAAA
CTCTAATGGATCTCAGTTTCAATCCTTGACCATTGCAATGACGATGCTAG
TTCATGAAGCAATCCAAAAGTACATTCATCCGACGAGATACAGGCAGATT
ATCGAAACTGAAAGCAGTGAGCGATTGTCAATTGAAGAACAAAGATTTAT
ATCAGAAGATCAAAAGCATAGCTCCCAAGTTGCTAAAATTcattacaaaa
agaaacaatCCAGACAAGTTGCGATAGAAGGTAAAAAGTGCTTGGATAAA
ATGACGATTGATTGTAGGAATCAAAATCGAACGCTTATGGAAATTTACAA
CAACTTGGACGTTGTTTTTGATCAAAACGTTCTCGATAAAAGCCGACAAA
TCATTGGTTCAACACAGTTGACCGATCCAGATGGCGCATCCTGTTCGAAG
TATCAAGATCCTTATCAGCCTGTCGACCCTTTAGACGAATCTACTGACTT
TGTAACTTTACAATCGAATACGACAGACGGAAAGGAAGAAGTTTCGGTTG
AGG Run BLAST on NCBI protein sequence of TCONS_00043117-protein >TCONS_00043117-protein ID=TCONS_00043117-protein|Name=TCONS_00043117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
TFQFLTIEMINKAKKNEGFIDQTEFKTSSTYIFDTLILTSDIIDIIDLYI
FNIRPRLGAKCDYLLVNSNGSQFQSLTIAMTMLVHEAIQKYIHPTRYRQI
IETESSERLSIEEQRFISEDQKHSSQVAKIHYKKKQSRQVAIEGKKCLDK
MTIDCRNQNRTLMEIYNNLDVVFDQNVLDKSRQIIGSTQLTDPDGASCSK
YQDPYQPVDPLDESTDFVTLQSNTTDGKEEVSVE Run BLAST on NCBI transcript from alignment at sc0003927:6229..6931 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043117 ID=TCONS_00043117|Name=TCONS_00043117|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0003927:6229..6931 (Clytia hemisphaerica)
CCTCAACCGAAACTTCTTCCTTTCCGTCTGTCGTATTCGATTGTAAAGTT
ACAAAGTCAGTAGATTCGTCTAAAGGGTCGACAGGCTGATAAGGATCTTG
ATACTTCGAACAGGATGCGCCATCTGGATCGGTCAACTGTGTTGAACCAA
TGATTTGTCGGCTTTTATCGAGAACGTTTTGATCAAAAACAACGTCCAAG
TTGTTGTAAATTTCCATAAGCGTTCGATTTTGATTCCTACAATCAATCGT
CATTTTATCCAAGCACTTTTTACCTTCTATCGCAACTTGTCTGGattgtt
tctttttgtaatgAATTTTAGCAACTTGGGAGCTATGCTTTTGATCTTCT
GATATAAATCTTTGTTCTTCAATTGACAATCGCTCACTGCTTTCAGTTTC
GATAATCTGCCTGTATCTCGTCGGATGAATGTACTTTTGGATTGCTTCAT
GAACTAGCATCGTCATTGCAATGGTCAAGGATTGAAACTGAGATCCATTA
GAGTTTACTAAAAGATAATCACACTTTGCACCTAGTCGAGGACGGATGTT
AAAGATATACAAGTCGATGATATCTATAATGTCGGAGGTTAAGATTAAGG
TATCAAATATGTAAGTACTAGATGTTTTAAACTCGGTCTGATCAATGAAG
CCTTCATTTTTCTTAGCCTTGTTAATCATTTCGATTGTTAAAAATTGGAA
AGT Coding sequence (CDS) from alignment at sc0003927:6229..6931 >TCONS_00043117 ID=TCONS_00043117|Name=TCONS_00043117|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0003927:6229..6931 (Clytia hemisphaerica)
CTCAACCGAAACTTCTTCCTTTCCGTCTGTCGTATTCGATTGTAAAGTTA
CAAAGTCAGTAGATTCGTCTAAAGGGTCGACAGGCTGATAAGGATCTTGA
TACTTCGAACAGGATGCGCCATCTGGATCGGTCAACTGTGTTGAACCAAT
GATTTGTCGGCTTTTATCGAGAACGTTTTGATCAAAAACAACGTCCAAGT
TGTTGTAAATTTCCATAAGCGTTCGATTTTGATTCCTACAATCAATCGTC
ATTTTATCCAAGCACTTTTTACCTTCTATCGCAACTTGTCTGGattgttt
ctttttgtaatgAATTTTAGCAACTTGGGAGCTATGCTTTTGATCTTCTG
ATATAAATCTTTGTTCTTCAATTGACAATCGCTCACTGCTTTCAGTTTCG
ATAATCTGCCTGTATCTCGTCGGATGAATGTACTTTTGGATTGCTTCATG
AACTAGCATCGTCATTGCAATGGTCAAGGATTGAAACTGAGATCCATTAG
AGTTTACTAAAAGATAATCACACTTTGCACCTAGTCGAGGACGGATGTTA
AAGATATACAAGTCGATGATATCTATAATGTCGGAGGTTAAGATTAAGGT
ATCAAATATGTAAGTACTAGATGTTTTAAACTCGGTCTGATCAATGAAGC
CTTCATTTTTCTTAGCCTTGTTAATCATTTCGATTGTTAAAAATTGGAAA
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043117-exon-sc0003927-1491911889:6229..6931 | TCONS_00043117-exon-sc0003927-1491911889:6229..6931 | Clytia hemisphaerica | exon |
| TCONS_00043117-exon-sc0003927-1510915933:6229..6931 | TCONS_00043117-exon-sc0003927-1510915933:6229..6931 | Clytia hemisphaerica | exon |
| TCONS_00043117-exon-sc0003927-1575043694:6229..6931 | TCONS_00043117-exon-sc0003927-1575043694:6229..6931 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003927 | supercontig | sc0003927:6229..6931 . |
Blast
The following BLAST results are available for this feature:
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