TCONS_00043116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043116
Unique NameTCONS_00043116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043116 ID=TCONS_00043116|Name=TCONS_00043116|organism=Clytia hemisphaerica|type=transcript|length=707bp
TAGGAAAGATATTCTATATATCTTTTTCTCTATtactttattgacttctc
tttaagcgttaaatatattttaataaaacgcCCACTCCCTTTTTGAATAA
CTCGTAAGATCGCCCACCCGCCGTAGATTCTCTCTGTCACGCCCTTTCCA
AATTACAAAACCACGCACCCGCTCCCCGTCCCATCCACTCGCCGCCCCCA
TCGTCCGCCGAATTAACAATGGAATGGCTTCTTTTCTGGACagctttcga
acgttcgaacgttcaaacgttcgaattcgaaATAACTTGTAgttcaaatc
aaaaattaaacaaagTAAAGGTTCTGTAAAAGTTGGATGTTTCATGCACG
AAGACTGGAAGAGGCTGGTTCTCTTACAAAAATCAACTAGATAATATTCA
AGCTGGAGTGTATTATTGGTTTCCTTATTGCGACTATCGTCAGCTGACTT
TGTGTGGTCACCAGCAGAAAGTACCGAAAATATGCTAGTAAAGGATCGCA
AATGTGTGAAGGAGACCAAAGAAATCGCAATCAAGATATCGTTTTTAACA
CTTCGAATAACAATCATACAGGAAACGTTTGGAATGATTATCACAAAGAT
GCCAGAAAGGAAGTGACGGAAGAGaaagaacatcaaatttttgatttcat
tacgTTTAATTTATACTGATTGTAGATTTTCATACCCAGAAAATTGTATA
GAAAANN
Run BLAST on NCBI

transcript from alignment at sc0003927:7505..8846-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043116 ID=TCONS_00043116|Name=TCONS_00043116|organism=Clytia hemisphaerica|type=transcript|length=1342bp|location=Sequence derived from alignment at sc0003927:7505..8846- (Clytia hemisphaerica)
TAGGAAAGATATTCTATATATCTTTTTCTCTATTACTTTATTGACTTCTC
TTTAAGCGTTAAATATATTTTAATAAAACGCCCACTCCCTTTTTGAATAA
CTCGTAAGATCGCCCACCCGCCGTAGATTCTCTCTGTCACGCCCTTTCCA
AATTACAAAACCACGCACCCGCTCCCCGTCCCATCCACTCGCCGCCCCCA
TCGTCCGCCGAATTAACAATGGAATGGCTTCTTTTCTGGACAGCTTTCGA
ACGTTCGAACGTTCAAACGTTCGAATTCGAAATAACTTGTAGTTCAAATC
AAAAATTAAACAAAGTAAAGGTTCTGTAAAAGTTGGATGTTTCATGCACG
AAGACTGGAAGAGGCTGGTTCTCTTACAAAAATCAACTAGATAATGTAAG
TAGTTTACATTAAACTGAAAATGCTTTTGATATTTAAGTTAATTCTTAGA
GGCTTTATCGGTGTAGCTTATTTCAGGTTTCAATTTCTGATGATATTTAT
TTTTGAGAGCAAACCCTGGAAAAATTACATTATCTTCAGTAAACTTTATG
TTAAAACTTTTTATTTTAACTTCTCTTCCCTCAGATTCAAGCTGGAGTGT
ATTATTGGTTTCCTTATTGCGACTATCGTCAGCTGACTTTGTGTGGTCAC
CAGCAGAAAGTACCGAAAATATGCTAGTAAAGGTAGGTGGAATGTAACAA
GACTTTAATAATATCTTTCCAAAACTATACTAATTTCTTGCGAATACCCT
TGCATCACTGAGTGAGCTTGGTACTTTAAACTACTGAAATTTGACTTGAA
AACACCCCTGTCTCAACGACAATAATTTAGCAAAGTCCTTGGTAGAATAC
ATTTCGTGAAACATAAAGTTTGGCCATGAAATTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
ATTTACTATTTGTCTGTTATTTTGTCAGGATCGCAAATGTGTGAAGGAGA
CCAAAGAAATCGCAATCAAGATATCGTTTTTAACACTTCGAATAACAATC
ATACAGGAAACGTTTGGAATGATTATCACAAAGATGCCAGAAAGGAAGTG
ACGGAAGAGAAAGAACATCAAATTTTTGATTTCATTACGTTTAATTTATA
CTGATTGTAGATTTTCATACCCAGAAAATTGTATAGAAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026846XLOC_026846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043116-exon-sc0003927-1575043694:8452..8846TCONS_00043116-exon-sc0003927-1575043694:8452..8846Clytia hemisphaericaexon
TCONS_00043116-exon-sc0003927-1575043694:8165..8262TCONS_00043116-exon-sc0003927-1575043694:8165..8262Clytia hemisphaericaexon
TCONS_00043116-exon-sc0003927-1575043694:7505..7718TCONS_00043116-exon-sc0003927-1575043694:7505..7718Clytia hemisphaericaexon
TCONS_00043116-exon-sc0003927-1510915933:8452..8846TCONS_00043116-exon-sc0003927-1510915933:8452..8846Clytia hemisphaericaexon
TCONS_00043116-exon-sc0003927-1510915933:8165..8262TCONS_00043116-exon-sc0003927-1510915933:8165..8262Clytia hemisphaericaexon
TCONS_00043116-exon-sc0003927-1510915933:7505..7718TCONS_00043116-exon-sc0003927-1510915933:7505..7718Clytia hemisphaericaexon
TCONS_00043116-exon-sc0003927-1491911889:8452..8846TCONS_00043116-exon-sc0003927-1491911889:8452..8846Clytia hemisphaericaexon
TCONS_00043116-exon-sc0003927-1491911889:8165..8262TCONS_00043116-exon-sc0003927-1491911889:8165..8262Clytia hemisphaericaexon
TCONS_00043116-exon-sc0003927-1491911889:7505..7718TCONS_00043116-exon-sc0003927-1491911889:7505..7718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003927supercontigsc0003927:7505..8846 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07576	0.828221	1.15409	0.223386	1.95716	2.77118	2.15532	2.57472	1.31376	1.42003	2.09732	1.60567	1.35508	1.33966	1.93532	1.71038	1.31039	1.08786	1.36314	0.887385	1.34168	2.01458	0.403292	0.906159	13.638	12.627	1.82549	1.00372	1.2953	1.05824
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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