TCONS_00043112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043112
Unique NameTCONS_00043112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1125

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043112 ID=TCONS_00043112|Name=TCONS_00043112|organism=Clytia hemisphaerica|type=transcript|length=1125bp
tttttcaagtggAAAGGTTTAGAATAGTAATCTTTAAGATGAAAGTGCTA
ATTTTCATGCTGATTATTTTAAACCATTGCGAATCTGTACAAGGCAAATG
GTATGAAGCCATAAAGAATCCAAATGTAACATCAGAAAATGAATTACCGC
CAAAACCTCTCTCAGCTAGATCACCAACAGAATGTGCTTTAAAATGTCGA
ATCAAATGTATGGAAAACTATTTTGTGGGGAACGAAAAGCAATGTTATTG
TTGAATCGAACTGAAATGCCAAATATTGATGGTGGTGTTTCAtaccaaga
aattttgaaagcaCAATACGATGAAGATAAGAGTTGCTATGAATGTATTT
CTTGCAAAACcttcaaaaattgcaaagacGTTCAAGAGAGATGTCCAAAA
TGTGCAGACCATTCCGATTTCTACTTGCTGGAGTTCAATGGTAATTCCCA
TCAAGGTTTCTGTGAAATGAAATCGGACGGGGGAGGATGGTTAGTTGTTG
GAAACATAACAGTTGATGATGAAAACTCATTTCAATCGCTTTACAATGAC
CATATTCGTTCCCCGGCAACCATCAAACAGCTGCATAAGGCCTCATCCGG
AAACCTTTTGCTCGCACCGGAACTATTACGGAACCTTCTTAGTGTTGGCA
GATACCGTGAGATACGGGCACGTTGTTTCAAATCATGGCATCAAAGAACT
CTGGATATAGTCATCTATGGGGAGGACGCAATCAACAAGTTTGCCGCCAA
AACATCCATGAATGAAGGATTGATGTGCCCCCATGTTCGGTTTCTTCAGG
ATGATAATTCATGGATGCAATCTTTGAATTGTAATGATTACAAAATGTAC
AACCGACCAAATTATTGGGATCATTTCATTTTTGTCGCCTCGGAATCACA
TGTCCATGTACATAATTCCGAAATGGAATGTGATGATAATGATACCGACC
AAGGCTTCACAAAAGAAGGGTATTGGCTTTTCTATGTacgttgaaaaatt
gaaataactcgTCTACCATTAACGGCACTTTGGAAATAAGAACCAAATTA
ATTTTAACTGCATCTGTTTTTCATATCTCCTAGGAGACATAGGGAAGAGT
ATCAACACACACACAAATACTTAGC
Run BLAST on NCBI

protein sequence of TCONS_00043112-protein

>TCONS_00043112-protein ID=TCONS_00043112-protein|Name=TCONS_00043112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MCFKMSNQMYGKLFCGERKAMLLLNRTEMPNIDGGVSYQEILKAQYDEDK
SCYECISCKTFKNCKDVQERCPKCADHSDFYLLEFNGNSHQGFCEMKSDG
GGWLVVGNITVDDENSFQSLYNDHIRSPATIKQLHKASSGNLLLAPELLR
NLLSVGRYREIRARCFKSWHQRTLDIVIYGEDAINKFAAKTSMNEGLMCP
HVRFLQDDNSWMQSLNCNDYKMYNRPNYWDHFIFVASESHVHVHNSEMEC
DDNDTDQGFTKEGYWLFYVR
Run BLAST on NCBI

transcript from alignment at sc0003926:3376..5884-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043112 ID=TCONS_00043112|Name=TCONS_00043112|organism=Clytia hemisphaerica|type=transcript|length=2509bp|location=Sequence derived from alignment at sc0003926:3376..5884- (Clytia hemisphaerica)
TTTTTCAAGTGGAAAGGTTTAGAATAGTAATCTTTAAGATGAAAGTGCTA
ATTTTCATGCTGATTATTTTAAACCATTGCGAATCTGTACAAGGCAAATG
GTATGAAGCCATAAAGAATCCAAATGTAACATCAGAAAATGAATTACCGC
CAAAACCTCTCTCAGCTAGATCACCAACAGAATGTGCTTTAAAATGTCGA
ATCAAATGTATGGAAAACTATTTTGTGGGGAACGAAAAGCAATGTTATTG
TTGAATCGAACTGAAATGCCAAATATTGATGGTGGTGTTTCATACCAAGA
AATTTTGAAAGCACAATACGATGAAGATAAGGTGATATATATACATAGGC
CAATTTTGTATTCAGTATGCTTCGTAATCAAGAATTATTCAGCTAGTCTA
TATTAAAGTGTCCCGTTATGAAAATATTTTGAAAGAAATGGGTGGTCCCC
TGTGATATGAAAGTAGCGGAAAAAAGTAAGGTTATAGTCTTTGCTCTCTA
TTATACAAAAATATATTTTTCCTATAAATTATTATAATAAGCTCGCAAAA
ATTTGATGTGCATAGAAAGTATTTTATATCAATTTCACAGAGTTGCTATG
AATGTATTTCTTGCAAAACCTTCAAAAATTGCAAAGACGTTCAAGAGAGA
TGTCCAAAATGTGCAGACCATTCCGATTTCTACTTGCTGGAGTTCAATGG
TAATTCCCATCAAGGTTTCTGTGAAATGAAATCGGACGGGGGTAAGTACA
TACAATGGTAATGAGTGTGTGTCCCCCTGGCCCGTGGGAGAGGCGATAGG
TGAAACGCTGAGTTTAAAAAAATGGACCCTACTTGTGACTCGATTTTTTG
TAAATTTTGCCAAAATGTTGCGAAAAAAGTGACCCTGAATGGAATTTTCT
CAAAATTTTCCACTTTTTTTCGGCACATTCCCGTTCTTCTTTTTGCCTAA
GTACCCCCCGGGCTTTCAGAAAATAGCAAAATGTTGATCGTAAGAGTACC
TTAAAGGAAGAAATTTTGGCGGGAATTTAATTTGGCGGATGGCCGAAAAA
GTTTTTTTAGAGGGAATTTAATTTGGCGGATGGACGAAAAAACTAAATTT
TGCAAGAATTTAATTTGGCGTTTGCTGAAAAATTTATCCTTAAAATGGCG
TAAAAACAGCAAAAAAATGCAAAAACACCTTAAACGAGATCATATTTAAA
AAAAGTTTAATTTGGCGGATGGCGGAAAAAAGAAATTTTGGCGGGAACTT
AATTTGGCGAATTCTGGCCAAATCTACCAAATCCGCCAAATTTTCTTTCC
GCCAGAATTTCTTCCTTTAAGGTAGCATATGTGTAATAATGAACGATGTT
GCCCAAGATCGAAAATTATGAAATTGTTTATCCTTTTCTACTTCTCGTAA
CTTCAAATGGGAAAACTAATGGTATCAACAACGTTCTGAAGGATTTTGAT
CATTAAATTATTCTAAAGGTAGAATATTTTTTTCTAAATTTCTCCGAAAC
CTAATCATCTCCCATGGAGAAAGACGTAATTTCTGAAAATACATTAAGTC
TAAAAATTTCTAAAATTGAAAATATTTTTCTCTTTTGCATGTTGGTAATT
TTAAATCATATAGCATTTCTGGCGGTTTTCTCAAAGAGTTAATTCTCAAT
CTAATTTGTGCATTGTTTTAGAAACAACGCCTGTATACGATAAAGAGGTG
CAAACAGGGTTCCCAGCAGATCTACGTACATGTCTATGGCGACCTAGGAG
TATCATTGTAAAAATAAGAAAAATTGATACGAAAATTTGTAAATGAATTT
GCAATTTACTAATGATAATAATGGGCCAGCGTACATCTTCATTACTTTAA
ACTATTTAAAATTCAGGAGGATGGTTAGTTGTTGGAAACATAACAGTTGA
TGATGAAAACTCATTTCAATCGCTTTACAATGACCATATTCGTTCCCCGG
CAACCATCAAACAGCTGCATAAGGCCTCATCCGGAAACCTTTTGCTCGCA
CCGGAACTATTACGGAACCTTCTTAGTGTTGGCAGATACCGTGAGATACG
GGCACGTTGTTTCAAATCATGGCATCAAAGAACTCTGGATATAGTCATCT
ATGGGGAGGACGCAATCAACAAGTTTGCCGCCAAAACATCCATGAATGAA
GGATTGATGTGCCCCCATGTTCGGTTTCTTCAGGATGATAATTCATGGAT
GCAATCTTTGAATTGTAATGATTACAAAATGTACAACCGACCAAATTATT
GGGATCATTTCATTTTTGTCGCCTCGGAATCACATGTCCATGTACATAAT
TCCGAAATGGAATGTGATGATAATGATACCGACCAAGGCTTCACAAAAGA
AGGGTATTGGCTTTTCTATGTACGTTGAAAAATTGAAATAACTCGTCTAC
CATTAACGGCACTTTGGAAATAAGAACCAAATTAATTTTAACTGCATCTG
TTTTTCATATCTCCTAGGAGACATAGGGAAGAGTATCAACACACACACAA
ATACTTAGC

Coding sequence (CDS) from alignment at sc0003926:3376..5884-

>TCONS_00043112 ID=TCONS_00043112|Name=TCONS_00043112|organism=Clytia hemisphaerica|type=CDS|length=2439bp|location=Sequence derived from alignment at sc0003926:3376..5884- (Clytia hemisphaerica)
GAGGATGGTTAGTTGTTGGAAACATAACAGTTGATGATGAAAACTCATTT
CAATCGCTTTACAATGACCATATTCGTTCCCCGGCAACCATCAAACAGCT
GCATAAGGCCTCATCCGGAAACCTTTTGCTCGCACCGGAACTATTACGGA
ACCTTCTTAGTGTTGGCAGATACCGTGAGATACGGGCACGTTGTTTCAAA
TCATGGCATCAAAGAACTCTGGATATAGTCATCTATGGGGAGGACGCAAT
CAACAAGTTTGCCGCCAAAACATCCATGAATGAAGGATTGATGTGCCCCC
ATGTTCGGTTTCTTCAGGATGATAATTCATGGATGCAATCTTTGAATTGT
AATGATTACAAAATGTACAACCGACCAAATTATTGGGATCATTTCATTTT
TGTCGCCTCGGAATCACATGTCCATGTACATAATTCCGAAATGGAATGTG
ATGATAATGATACCGACCAAGGCTTCACAAAAGAAGGGTATTGGCTTTTC
TATGTACGTTGAAGTTGCTATGAATGTATTTCTTGCAAAACCTTCAAAAA
TTGCAAAGACGTTCAAGAGAGATGTCCAAAATGTGCAGACCATTCCGATT
TCTACTTGCTGGAGTTCAATGGTAATTCCCATCAAGGTTTCTGTGAAATG
AAATCGGACGGGGATGTGCTTTAAAATGTCGAATCAAATGTATGGAAAAC
TATTTTGTGGGGAACGAAAAGCAATGTTATTGTTGAATCGAACTGAAATG
CCAAATATTGATGGTGGTGTTTCATACCAAGAAATTTTGAAAGCACAATA
CGATGAAGATAAGGAGGATGGTTAGTTGTTGGAAACATAACAGTTGATGA
TGAAAACTCATTTCAATCGCTTTACAATGACCATATTCGTTCCCCGGCAA
CCATCAAACAGCTGCATAAGGCCTCATCCGGAAACCTTTTGCTCGCACCG
GAACTATTACGGAACCTTCTTAGTGTTGGCAGATACCGTGAGATACGGGC
ACGTTGTTTCAAATCATGGCATCAAAGAACTCTGGATATAGTCATCTATG
GGGAGGACGCAATCAACAAGTTTGCCGCCAAAACATCCATGAATGAAGGA
TTGATGTGCCCCCATGTTCGGTTTCTTCAGGATGATAATTCATGGATGCA
ATCTTTGAATTGTAATGATTACAAAATGTACAACCGACCAAATTATTGGG
ATCATTTCATTTTTGTCGCCTCGGAATCACATGTCCATGTACATAATTCC
GAAATGGAATGTGATGATAATGATACCGACCAAGGCTTCACAAAAGAAGG
GTATTGGCTTTTCTATGTACGTTGAAGTTGCTATGAATGTATTTCTTGCA
AAACCTTCAAAAATTGCAAAGACGTTCAAGAGAGATGTCCAAAATGTGCA
GACCATTCCGATTTCTACTTGCTGGAGTTCAATGGTAATTCCCATCAAGG
TTTCTGTGAAATGAAATCGGACGGGGATGTGCTTTAAAATGTCGAATCAA
ATGTATGGAAAACTATTTTGTGGGGAACGAAAAGCAATGTTATTGTTGAA
TCGAACTGAAATGCCAAATATTGATGGTGGTGTTTCATACCAAGAAATTT
TGAAAGCACAATACGATGAAGATAAGGAGGATGGTTAGTTGTTGGAAACA
TAACAGTTGATGATGAAAACTCATTTCAATCGCTTTACAATGACCATATT
CGTTCCCCGGCAACCATCAAACAGCTGCATAAGGCCTCATCCGGAAACCT
TTTGCTCGCACCGGAACTATTACGGAACCTTCTTAGTGTTGGCAGATACC
GTGAGATACGGGCACGTTGTTTCAAATCATGGCATCAAAGAACTCTGGAT
ATAGTCATCTATGGGGAGGACGCAATCAACAAGTTTGCCGCCAAAACATC
CATGAATGAAGGATTGATGTGCCCCCATGTTCGGTTTCTTCAGGATGATA
ATTCATGGATGCAATCTTTGAATTGTAATGATTACAAAATGTACAACCGA
CCAAATTATTGGGATCATTTCATTTTTGTCGCCTCGGAATCACATGTCCA
TGTACATAATTCCGAAATGGAATGTGATGATAATGATACCGACCAAGGCT
TCACAAAAGAAGGGTATTGGCTTTTCTATGTACGTTGAAGTTGCTATGAA
TGTATTTCTTGCAAAACCTTCAAAAATTGCAAAGACGTTCAAGAGAGATG
TCCAAAATGTGCAGACCATTCCGATTTCTACTTGCTGGAGTTCAATGGTA
ATTCCCATCAAGGTTTCTGTGAAATGAAATCGGACGGGGATGTGCTTTAA
AATGTCGAATCAAATGTATGGAAAACTATTTTGTGGGGAACGAAAAGCAA
TGTTATTGTTGAATCGAACTGAAATGCCAAATATTGATGGTGGTGTTTCA
TACCAAGAAATTTTGAAAGCACAATACGATGAAGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026843XLOC_026843Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043112-proteinTCONS_00043112-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043112-exon-sc0003926-1575043694:5554..5884TCONS_00043112-exon-sc0003926-1575043694:5554..5884Clytia hemisphaericaexon
TCONS_00043112-exon-sc0003926-1575043694:5144..5294TCONS_00043112-exon-sc0003926-1575043694:5144..5294Clytia hemisphaericaexon
TCONS_00043112-exon-sc0003926-1575043694:3376..4018TCONS_00043112-exon-sc0003926-1575043694:3376..4018Clytia hemisphaericaexon
TCONS_00043112-exon-sc0003926-1510915933:5554..5884TCONS_00043112-exon-sc0003926-1510915933:5554..5884Clytia hemisphaericaexon
TCONS_00043112-exon-sc0003926-1510915933:5144..5294TCONS_00043112-exon-sc0003926-1510915933:5144..5294Clytia hemisphaericaexon
TCONS_00043112-exon-sc0003926-1510915933:3376..4018TCONS_00043112-exon-sc0003926-1510915933:3376..4018Clytia hemisphaericaexon
TCONS_00043112-exon-sc0003926-1491911889:5554..5884TCONS_00043112-exon-sc0003926-1491911889:5554..5884Clytia hemisphaericaexon
TCONS_00043112-exon-sc0003926-1491911889:5144..5294TCONS_00043112-exon-sc0003926-1491911889:5144..5294Clytia hemisphaericaexon
TCONS_00043112-exon-sc0003926-1491911889:3376..4018TCONS_00043112-exon-sc0003926-1491911889:3376..4018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003926supercontigsc0003926:3376..5884 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0387312	0.101832	0.0877068	0.0858074	0	0.123821	0.09959	0.0593706	0.097914	0.142686	0.196199	0	0	0.150927	0	0	0.0506284	0	0.123516	0.129251	0	0	0.450724	0.5724	0.600708	0.305078	0	0	0.0859771	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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