TCONS_00043111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043111
Unique NameTCONS_00043111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043111 ID=TCONS_00043111|Name=TCONS_00043111|organism=Clytia hemisphaerica|type=transcript|length=325bp
GTTGGCTGATTTTGCTAAAGTTTGTACATTTAAGCTCCTTGGGTGAGTCC
TTGGGGcattcttcttcattcttcttggGAGTTGGCTGATATTGCTAAAG
TCTTGTACATGTAGTTCCTTGAGTGAGTCCTTGGGgcattcttcttcatt
ttttttggtgGGGTGGCTGATTTTGCTAAAGTTTGTACATTTAAGCTCCT
TGGGTGAGTCCTTGGGGCATTCTCCTTCATTCTTCTTGGGAGTTGGCTGA
TATTGCTAAAGTCTTGTACATGTAGTTCCTTGAGTGAGTCCTTGGGgcat
tcttcttcttttttttttttttggg
Run BLAST on NCBI

transcript from alignment at sc0003923:5677..6001

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043111 ID=TCONS_00043111|Name=TCONS_00043111|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at sc0003923:5677..6001 (Clytia hemisphaerica)
cccaaaaaaaaaaaaaagaagaagaatgcCCCAAGGACTCACTCAAGGAA
CTACATGTACAAGACTTTAGCAATATCAGCCAACTCCCAAGAAGAATGAA
GGAGAATGCCCCAAGGACTCACCCAAGGAGCTTAAATGTACAAACTTTAG
CAAAATCAGCCACCCcaccaaaaaaaatgaagaagaatgcCCCAAGGACT
CACTCAAGGAACTACATGTACAAGACTTTAGCAATATCAGCCAACTCcca
agaagaatgaagaagaatgCCCCAAGGACTCACCCAAGGAGCTTAAATGT
ACAAACTTTAGCAAAATCAGCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026842XLOC_026842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043111-exon-sc0003923-1491911889:5677..6001TCONS_00043111-exon-sc0003923-1491911889:5677..6001Clytia hemisphaericaexon
TCONS_00043111-exon-sc0003923-1510915933:5677..6001TCONS_00043111-exon-sc0003923-1510915933:5677..6001Clytia hemisphaericaexon
TCONS_00043111-exon-sc0003923-1575043694:5677..6001TCONS_00043111-exon-sc0003923-1575043694:5677..6001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003923supercontigsc0003923:5677..6001 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.35837	5.87592	3.59225	4.4491	4.56999	2.50316	3.11783	1.07636	1.1108	12.7537	0	2.32887	4.7312	5.67413	8.31638	13.6254	11.9213	8.22262	5.21797	10.2588	5.13295	8.05074	6.53923	7.94454	0	1.24571	17.9711	14.4658	13.3451	10.3788
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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