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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043109 ID=TCONS_00043109|Name=TCONS_00043109|organism=Clytia hemisphaerica|type=transcript|length=391bp
GCCCGTTATAAAAGTTCTCCATAAATTTTTTGAGGCGACAGAgtattttt
caaagcaaaacttCGTGAGGAAAAGACAAAGATGGTCATGGAAGATCCAA
TATTTCTGGTGATTTGACATCTTCGGCATCTTCTTTTTATGGTTCAAAAG
ATTGCTTAATGTGGAGGATGCAAGTAACAAGATTATAGAAGAgagcTTAT
GCTGAAAAGATGGAGCAAAGACTTTTGATTGATCATTTTCAGGTTCGTAC
CCATAATCCTACTGGCCCTctggaaaatgcaaaaataactgATTGTTCAA
AGCAAGGTATGCTATTCTTTGGTGTGTTTTAGGTACCAACAGTCAACTTT
ATCATTGACGAATAATACACCCCTTtttcagtgacccggtg Run BLAST on NCBI transcript from alignment at sc0003922:496..2186+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043109 ID=TCONS_00043109|Name=TCONS_00043109|organism=Clytia hemisphaerica|type=transcript|length=1691bp|location=Sequence derived from alignment at sc0003922:496..2186+ (Clytia hemisphaerica)
GCCCGTTATAAAAGTTCTCCATAAATTTTTTGAGGCGACAGAgtattttt
caaagcaaaacttCGTGAGGAAAAGACAAAGATGGTCATGGAAGATCCAA
TATTTCTGGTGATTTGACATCTTCGGCATCTTCTTTTTATGGTTCAAAAG
ATTGCTTAATGTGGAGGATGCAAGTAACAAGATTATAGAAGAGTAAGTGG
TAAAAAATTGCTTCTTTCTATTTGTTTTCATACAGTAGTATACCGTCATA
TATTTATAGGCCTTTATACGAAGGAATAAAATATTACCACAGGCTCACAA
AAACCTAgcgttttaaagaaatttttgtttgttgCATTTTGTATTCTGAA
CATCTTGGTTTCTTCCACCACTGATCAAGTTTTGAGTGTTCTCGTTCGAC
TTTTGGTTTAAGCTTTTCCATTCTATTTTGTAAACAATAAAACACAAGGG
GCCACATGAATTTAAGACTTATTAAGATACACATCCAAGCAATAAAACAA
GGCCTTCTTTTCTCAAAACGTTTGTTTCTGTACTTTGTGTTGTTGTTCAG
GCATTTTTAGTTGGGTTTAATTAGCAAGCGGTTGgccttttcaattttta
gaaaaatattttctctaatGTGCGTTTCGAATGTTTNgatcaggagatat
aagcccttaaagtttgaactagcgattttttaaaaaaaacttagaaaaaa
ggaccctggcactcaaagggttaagatACACATCCAAGCAATAAAACAAG
GCCTTCTTTTCTCAAAACGTTCGTCTCTGTAGTTTATGTTGGGTTGGCAT
TTTTAGTTGGGTTTAATTAGCAAGCGATTGgccttttcaatttttagaaa
aatattttctctaatgtgcgtttcgaatgttttgatttagaaacgttctt
ttttttaaaacattcgaataCGAAATTCATTTTGAACATTCGAATCGCCA
AAATTTcggatgttttgttttgattctttttcttgaaactttttAGTGAG
CCAATTTTAATGTGGTGCTCTTCAGTTTATAAAATGTTGGGATAAGATCT
GATaagattattatttttgccactttcatttttaaggagcTTATGCTGAA
AAGATGGAGCAAAGACTTTTGATTGATCATTTTCAGGTGAGTGGAATTTC
TAAGACGATCTTTTCTCTAATAATTGCAATTGGCTAgttaaaattctgaa
aattagaTGGCATCATAACATAATGAGTTTCTaaagtttcgtttttttga
TAAGTTCTTTGGGAAGCAagtacaaatttattttttctgaaaaaacagag
gagacacaaaaatattttgttcaaaaagagACCGGTGAATTGCAATAACT
GTGACTTTCAATTGACAACAACCCACTTCTGTGGTGGAAGACGTACAAAA
TTGGAGAAAGATTTTCGATCAAAAGGCGTTATTATTTAATCAAAATAAGG
GTCTTATTTTCGTGTATATATGGGTTTTCTTTGAGAAACTTAAGTTTCAT
TCGTATCAGAATACCCTGATTGACTGTTACTTTACCTTTTAGGTTCGTAC
CCATAATCCTACTGGCCCTctggaaaatgcaaaaataactgATTGTTCAA
AGCAAGGTATGCTATTCTTTGGTGTGTTTTAGGTACCAACAGTCAACTTT
ATCATTGACGAATAATACACCCCTTtttcagtgacccggtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043109-exon-sc0003922-1491911889:496..687 | TCONS_00043109-exon-sc0003922-1491911889:496..687 | Clytia hemisphaerica | exon |
| TCONS_00043109-exon-sc0003922-1510915933:496..687 | TCONS_00043109-exon-sc0003922-1510915933:496..687 | Clytia hemisphaerica | exon |
| TCONS_00043109-exon-sc0003922-1575043694:496..687 | TCONS_00043109-exon-sc0003922-1575043694:496..687 | Clytia hemisphaerica | exon |
| TCONS_00043109-exon-sc0003922-1491911889:1582..1631 | TCONS_00043109-exon-sc0003922-1491911889:1582..1631 | Clytia hemisphaerica | exon |
| TCONS_00043109-exon-sc0003922-1510915933:1582..1631 | TCONS_00043109-exon-sc0003922-1510915933:1582..1631 | Clytia hemisphaerica | exon |
| TCONS_00043109-exon-sc0003922-1575043694:1582..1631 | TCONS_00043109-exon-sc0003922-1575043694:1582..1631 | Clytia hemisphaerica | exon |
| TCONS_00043109-exon-sc0003922-1491911889:2038..2186 | TCONS_00043109-exon-sc0003922-1491911889:2038..2186 | Clytia hemisphaerica | exon |
| TCONS_00043109-exon-sc0003922-1510915933:2038..2186 | TCONS_00043109-exon-sc0003922-1510915933:2038..2186 | Clytia hemisphaerica | exon |
| TCONS_00043109-exon-sc0003922-1575043694:2038..2186 | TCONS_00043109-exon-sc0003922-1575043694:2038..2186 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003922 | supercontig | sc0003922:496..2186 + |
Blast
The following BLAST results are available for this feature:
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