TCONS_00043108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043108
Unique NameTCONS_00043108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043108 ID=TCONS_00043108|Name=TCONS_00043108|organism=Clytia hemisphaerica|type=transcript|length=652bp
cttaaaaatagaaacacaacAACAGGATTACAAtcacataaaaagtaaat
acaGCATTTGCGTTTTTTACTTCagttgtttttcttcttcagcaTCTGAA
TCGCTGACAAGGCTGATTGGgttgttgatctttgtttttgttttacgtAG
AGGTATTCTCGGCAGTTTAGGCTTTATTTCGAAGTCCGAAATATCTTCGT
CTTCACCAGGAACAGCAGAAGATGGCATTGGTAGCTGCTTAGCTGGAGTT
TTCTTTTTGGGTTCCACGTCACCTTCCGTCTCCGATTCGTCACTCAGCGA
GATTGGGTTAAGAATCTTGCTTTCTGTCTTTCGGCATGGCTGCCTCCTGA
TCGTTGGTTTTATATCTTCCTCAGAATCGTCACTGAGAACAATAGGATTT
GAGATCTCACTTGCAGTTTTACGGCATGGTGGCTGGCGTAGATCAGGCTT
TATATCTTCAACGATTGTCGAGGTAGTCGGTAGATCTGTTGGTAACTTCT
TGGACTTCTGTTTTCTCTCAGGTAGTTCATCCTCACTGTCCGAATCGGTA
AACAATAGTCTTAGCAAACCCTTCTTGGATGACTTTTTGCTTTTTCCATC
TAAGTCACTTGGCGAACAATTGTTTGTTTTGGACTTTTTTGCTTGGTTGA
GC
Run BLAST on NCBI

protein sequence of TCONS_00043108-protein

>TCONS_00043108-protein ID=TCONS_00043108-protein|Name=TCONS_00043108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
LNQAKKSKTNNCSPSDLDGKSKKSSKKGLLRLLFTDSDSEDELPERKQKS
KKLPTDLPTTSTIVEDIKPDLRQPPCRKTASEISNPIVLSDDSEEDIKPT
IRRQPCRKTESKILNPISLSDESETEGDVEPKKKTPAKQLPMPSSAVPGE
DEDISDFEIKPKLPRIPLRKTKTKINNPISLVSDSDAEEEKQLK
Run BLAST on NCBI

transcript from alignment at sc0003921:3993..4644

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043108 ID=TCONS_00043108|Name=TCONS_00043108|organism=Clytia hemisphaerica|type=transcript|length=652bp|location=Sequence derived from alignment at sc0003921:3993..4644 (Clytia hemisphaerica)
GCTCAACCAAGCAAAAAAGTCCAAAACAAACAATTGTTCGCCAAGTGACT
TAGATGGAAAAAGCAAAAAGTCATCCAAGAAGGGTTTGCTAAGACTATTG
TTTACCGATTCGGACAGTGAGGATGAACTACCTGAGAGAAAACAGAAGTC
CAAGAAGTTACCAACAGATCTACCGACTACCTCGACAATCGTTGAAGATA
TAAAGCCTGATCTACGCCAGCCACCATGCCGTAAAACTGCAAGTGAGATC
TCAAATCCTATTGTTCTCAGTGACGATTCTGAGGAAGATATAAAACCAAC
GATCAGGAGGCAGCCATGCCGAAAGACAGAAAGCAAGATTCTTAACCCAA
TCTCGCTGAGTGACGAATCGGAGACGGAAGGTGACGTGGAACCCAAAAAG
AAAACTCCAGCTAAGCAGCTACCAATGCCATCTTCTGCTGTTCCTGGTGA
AGACGAAGATATTTCGGACTTCGAAATAAAGCCTAAACTGCCGAGAATAC
CTCTacgtaaaacaaaaacaaagatcaacaacCCAATCAGCCTTGTCAGC
GATTCAGAtgctgaagaagaaaaacaactGAAGTAAAAAACGCAAATGCt
gtatttactttttatgtgaTTGTAATCCTGTTgttgtgtttctattttta
ag

Coding sequence (CDS) from alignment at sc0003921:3993..4644

>TCONS_00043108 ID=TCONS_00043108|Name=TCONS_00043108|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at sc0003921:3993..4644 (Clytia hemisphaerica)
CTCAACCAAGCAAAAAAGTCCAAAACAAACAATTGTTCGCCAAGTGACTT
AGATGGAAAAAGCAAAAAGTCATCCAAGAAGGGTTTGCTAAGACTATTGT
TTACCGATTCGGACAGTGAGGATGAACTACCTGAGAGAAAACAGAAGTCC
AAGAAGTTACCAACAGATCTACCGACTACCTCGACAATCGTTGAAGATAT
AAAGCCTGATCTACGCCAGCCACCATGCCGTAAAACTGCAAGTGAGATCT
CAAATCCTATTGTTCTCAGTGACGATTCTGAGGAAGATATAAAACCAACG
ATCAGGAGGCAGCCATGCCGAAAGACAGAAAGCAAGATTCTTAACCCAAT
CTCGCTGAGTGACGAATCGGAGACGGAAGGTGACGTGGAACCCAAAAAGA
AAACTCCAGCTAAGCAGCTACCAATGCCATCTTCTGCTGTTCCTGGTGAA
GACGAAGATATTTCGGACTTCGAAATAAAGCCTAAACTGCCGAGAATACC
TCTacgtaaaacaaaaacaaagatcaacaacCCAATCAGCCTTGTCAGCG
ATTCAGAtgctgaagaagaaaaacaactGAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026839XLOC_026839Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043108-proteinTCONS_00043108-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043108-exon-sc0003921-1491911889:3993..4644TCONS_00043108-exon-sc0003921-1491911889:3993..4644Clytia hemisphaericaexon
TCONS_00043108-exon-sc0003921-1510915933:3993..4644TCONS_00043108-exon-sc0003921-1510915933:3993..4644Clytia hemisphaericaexon
TCONS_00043108-exon-sc0003921-1575043694:3993..4644TCONS_00043108-exon-sc0003921-1575043694:3993..4644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003921supercontigsc0003921:3993..4644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.1501	3.54236	0.598145	0.329629	0	0.180613	0.308886	0.408354	0.502465	0.220691	0.301208	0.359775	0.0767235	0.198482	0.0654519	0.17663	0	0	0	0	0.0922167	0.113304	2.8052	3.32658	0.741924	1.0113	0.219625	0.117195	1.57132	0.525892
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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