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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043100 ID=TCONS_00043100|Name=TCONS_00043100|organism=Clytia hemisphaerica|type=transcript|length=930bp
GATTGGACAAAGATCCGCCATGGAATGTCCACCGGGTCACGTGATAAAAT
ACATGCTTTTGTTCCGAAGGCGAAAAGGCTGAACAGAGACTTTTCgatca
atattttaaaagattttggcCTTTATTTTCACATGAAATTCCAAATAATA
TGTCTTCATCACAGAAAATACCTGATGAACTTTCCACAGACCTATCTGTA
AAGATGGAAGaGCATTTCAAACCAAATATCCAACTTATTCCACCAAAAGC
TACTGCTAATGTGTTTGCAGTTTTACCAAATCAGAATCAGAATGAAAGCG
AAAACACAACAACTTTCAATGCACCTTCCCTTTTTTCAAATAATGTACAA
CAAACAACTGACAATACGTCACATCAAGTCAGAAATAATGAACATATGGG
TGCTACGCAAAGTCTTTCCTTTGCAAACATTCCTGGTAGAAATCATGAAG
TGACTGTAACCTCAGACCAGCCTAGATTTCCTGCACCTGAAGATGCCCAG
CATCAGTCTCAAGCACCAACCATCTTCAGTGCTCCACTGAACAGCTCCAA
CCTATTATCTTCTGGTCAACCACCAGAGCAAGATCAACAACAACCACCAC
ATGATGGCGCCTCAAATAAGGAAAATAACACCACACAGGATCACACCACA
CAGGATCACACCAGCGGACAAACATATAGTCATGGGATCGGTATTGTTAC
ATCAAACCCTTCATCCCAGCAACAATATTCTCAAAGCAATTCAGTTCAGC
CGCTTGTTTACTCTCAAACTTCTTCAAATGTTCAATATACACAACAGAGT
CAGGCAACCAATGCTTATCAAGTAATGAAATTTGTTCTTTTGACGCAATA
AAGGATATGAATGAAGGCAAATGAATAGCAGTTTTCTGTTATTAATTAAT
GCAAGGATTGAGCTATTTTCAACCTGGTGG Run BLAST on NCBI protein sequence of TCONS_00043100-protein >TCONS_00043100-protein ID=TCONS_00043100-protein|Name=TCONS_00043100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MSSSQKIPDELSTDLSVKMEEHFKPNIQLIPPKATANVFAVLPNQNQNES
ENTTTFNAPSLFSNNVQQTTDNTSHQVRNNEHMGATQSLSFANIPGRNHE
VTVTSDQPRFPAPEDAQHQSQAPTIFSAPLNSSNLLSSGQPPEQDQQQPP
HDGASNKENNTTQDHTTQDHTSGQTYSHGIGIVTSNPSSQQQYSQSNSVQ
PLVYSQTSSNVQYTQQSQATNAYQVMKFVLLTQ Run BLAST on NCBI transcript from alignment at sc0003916:11323..15980+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043100 ID=TCONS_00043100|Name=TCONS_00043100|organism=Clytia hemisphaerica|type=transcript|length=4658bp|location=Sequence derived from alignment at sc0003916:11323..15980+ (Clytia hemisphaerica)
GATTGGACAAAGATCCGCCATGGAATGTCCACCGGGTCACGTGATAAAAT
ACATGCTTTTGTTCCGAAGGCGAAAAGGCTGAACAGAGACTTTTCgatca
atattttaaaagattttggcCTTTATTTTCACATGAAATTCCAAATAATA
TGTCTTCATCACAGAAAATACCTGATGAACTTTCCACAGACCTATCTGTA
AAGATGGAAGGTAcgtattttgctttttttgttgTGTCTCGTGACGCTTT
GTCCAAAAGAAGAGTGGGAGAGAGGGAAGAGTTTGTGTTCCAGTGTCCAG
GTTCCTACGATTCTGTTCCAGACCACCAAGTCCCAGTTCTTTTCTCAAAC
CCTACCAATTTCAAATTCTACTGTTGAATAAAGACAACAATATATGTTTG
GAGACTAGGTACAAGGATTTCACTTTGTAATTGCTCTGGATTATGGAATC
AAAACCATTTATTTTTTGTCAGGCAACTTTGATATTTATTGATGTTTgat
ctttcattttgaaaagtGAATAATCACTCCTTGTTTGTCTGGGATTGACT
GATGAAACTGGATGAAAGGGTCTTCATCATGGTTCTAAAATCGAGTCTAA
AATAGCCTAGCATTACTTTTAATGTTTGTATTCTTGGAGGACAATACAGT
TTTAATTTAGTACTTGGATANTTACTTTTAATGTTTGTATTCTTGGAGGA
CAATACAGTTTTAATTTAGTACTTGGATATTCTAAATTCGTCTTTTAGTT
CCAACATTGTGTCTAGATGGAATAAGTCATCCATCCCTGAAAATGTAACC
AAAATATTGTACCTACTGTTCTGGACTGTTTGATTCTAAGATAACATACT
AAAGTACCTGCACCGACCCTGGGCACCGACTATAAGATACAAAGCCGACC
TTACGGTACCCACTATAATATAGACTAGGATCCTAACATCTCCTATAATA
CAATGAATAACAATATCAATAGTTTAAACGTTATATatatatcatttttc
aaaaggtttAGGCTTACAGACTTTGCGTCCGTCCGCTTCTAGTTGTGTAT
CTCGTCTCAACACTGTCCTTTTTGCTTTCTTGTATATCACTCATCTCCAT
ATTGTAAGGTACCGCTCTGTCCGACTCACCGTCAGAGTCTGTTAAATCAT
AGGGAATAGTGTCTGATTCAGAACCTTCTGAAAGTTCATTTTCCTGGGCA
TCAGGGTTTGAGGGGACCTGGAGAAGAGCTGGGGGCAAGGGGGCCCTTTC
TCTAGGTAGGTGACTAGGTGTTGGCGTGATGACTGCATAAACCTTTCTCA
CTCAGTTGATTTTGGTTTCTTCTCAATAATTTGCCATTAACGTTTACAGA
GTATGATCTTGGGGCCACTTGATCTAGGACTATTCCTCTTGCtgacattc
ttttgttttagcgTCTTGCATTGCCACTTCACTACCTGTAACAAAAAGTT
CTGGTtttgtaatttgtaatttcatATATCGTGGTAACTTTTTACAGATA
ATCTTTCTTTGTTAAGATTCCTCTGAGGCATCTCAGATCTGGGCTTATGA
ATTTTGGGTAAGTTGTCTGTCAATTGTCAACCTATAAGAAGTTGTGCTGG
TGATAGTCCACATTGTAAGGGAGAGTTTCTAAGGATAAGTAGCCCGATTA
GAATGTCTTGGTTGGATCTAACGCACTTTTTAAGCGTTCTCTTGACACTC
TTGACCATGGATTCTGCTAAACTGTTTGATCATAGATAATAGGGGCTACT
AGTAACATGTTTAATGTTCCATTGTCGTGTAAATTGTCTgaattttctat
aagaatattggGAGCTGTTGTCTGATATAAGAGTCTCAGGTACACcattt
caagaaaataattGTTTCAGTGCATTGGTAACTAAGTCAGATGTTGCCGA
AGATAAGATGTAAACCTCGGGCCACAATGAATAGTAATCCGCAACAATTA
AATAGTTCTTTCCTCCAAAATGGAATAAATCGCTACCCACTTGTTGCCAT
GCTCTATCCAGAATGTCTTGATGCAATAACGGACTCTTTGGTTTGGATGA
CAGTAATGTTGCACAAGTTTTACATTGCTTCACGATTGATTCAATGTCCT
TACTCATGCCggtccagaaaaaaaatataaatactcTGTCTTTCTCGTCG
TCTGCACTTTTCTATCCCGTTTTGTCCAGTGTGTATTCTAGTCAAAATTT
CCGGTTGCAGTTTTTTCCGTATAACTATTCAGCAACTCCTAACATCAGCA
AATTGTTCAATATtgcagggttcgaattatagcttTGCACTTCGAAATGC
gaagtgaattttagatttagcgacccaaaaaaatttcccaacTCAAAAAT
gtgaagttaaaaaattataagaaagcGCCTATTTTGCTACCCAcacattt
gtttatctattgctttatctacctgccacttcgctactttattcattcgc
tTATCTATTGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCctgccacttcgctactttattcattcgt
ttatctattgctttatcaacttgccacttcgctattttattcattcgttt
cTCTATtactttatcaacttgctacttAGCTACTTtcttcactcgtttat
ctaatTCTTTATTTACTTGCCATTTCGCTACTTTTGTCATACGTTTatat
attgctttatctacttgccacttcgctactttattcattcgcttatttat
tgttttatcaacttgctattttgctattttattcattcgtttatctctTG
CTTTGTCTACTTGCCACtttgctactttattcactcgatNCttatctatt
gttttatcaacttgctattttgctattttattcattcgtttatctctTGC
TTTGTCTACTTGCCACtttgctactttattcactcgattatctattgctt
tatcaactctctactttattcactcgtttatttattgctttatctacttg
ccactttgcaactttcttcattcgtttatctttACTTTATCAACTCACTA
CTTTAtccactcgtttatctattgcctTATCTATTCGTTACTTCGCATTT
GTAagcacaaaattttaaaacttgatTTGAAACAGGGGGTGCACACTTAG
TGTACTGGACCAGTGCCCCTTTGTACCATGGTACTAACTTGCAATTAACG
TTCAAAATAGGCGGACCACCCAGTTATAGCCTATCTTAAAATCAGATCCT
TAACATCAAATACAGTTATCAAAATGCAGTTACTTATCAAATACAGTTAG
AGACCTTGATCTTTCTGTCGGTAAgtcaataaagagaaaaatacctcata
aatggaaaaaataaggaaaaaataatttgtaaagaattttttcaaaaaag
taccaCCCACCACTAAGAACCCTGGTACAAAGTGGCATATCACCTACCAA
TTTGGACCACCCACCCAGCAGTGGTCCCCACAATAAGAAATACCCTGCAT
ACCAAATTCCCTATTTTCAGCCACCCCTTCTACCAGCATTGCAACCCaaa
taaaaaacttgaaaagatTGCTTCCCTTTATGATAAGGTGCAGCATCAAA
TATcataatgaaaaatttcaaaattgtgcGAATCTCCCTAGGGGTCTAGA
ggtctttaaaaattttcttatgtACCAGCACCCCTATTTTGAACTTTAAA
TACTAACTTCTTTGAGGAAAAAAAGGACCCAAACCCATCTTTAGCAGGTA
TATTCCTCTACACAGGAAGAAGGCTATTTAGAAACTGGTTGGTTATCAAG
AAAAATATGTTTAAATCGCCCTGGGATGACGCCTTGTAATAAATACCTAG
AGGTTAATTTCACCTCACAAAAATGTTCGGGgagctttcaatttttcaaa
ctaAGGTCAATctgaatctttctttttttcttttgcagaGCATTTCAAAC
CAAATATCCAACTTATTCCACCAAAAGCTACTGCTAATGTGTTTGCAGTT
TTACCAAATCAGAATCAGAATGAAAGCGAAAACACAACAACTTTCAATGC
ACCTTCCCTTTTTTCAAATAATGTACAACAAACAACTGACAATACGTCAC
ATCAAGTCAGAAATAATGAACATATGGGTGCTACGCAAAGTCTTTCCTTT
GCAAACATTCCTGGTAGAAATCATGAAGTGACTGTAACCTCAGACCAGCC
TAGATTTCCTGCACCTGAAGATGCCCAGCATCAGTCTCAAGCACCAACCA
TCTTCAGTGCTCCACTGAACAGCTCCAACCTATTATCTTCTGGTCAACCA
CCAGAGCAAGATCAACAACAACCACCACATGATGGCGCCTCAAATAAGGA
AAATAACACCACACAGGATCACACCACACAGGATCACACCAGCGGACAAA
CATATAGTCATGGGATCGGTATTGTTACATCAAACCCTTCATCCCAGCAA
CAATATTCTCAAAGCAATTCAGTTCAGCCGCTTGTTTACTCTCAAACTTC
TTCAAATGTTCAATATACACAACAGAGTCAGGCAACCAATGCTTATCAAG
TAATGAAATTTGTTCTTTTGACGCAATAAAGGATATGAATGAAGGCAAAT
GAATAGCAGTTTTCTGTTATTAATTAATGCAAGGATTGAGCTATTTTCAA
CCTGGTGG Coding sequence (CDS) from alignment at sc0003916:11323..15980+ >TCONS_00043100 ID=TCONS_00043100|Name=TCONS_00043100|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0003916:11323..15980+ (Clytia hemisphaerica)
ATGTCTTCATCACAGAAAATACCTGATGAACTTTCCACAGACCTATCTGT
AAAGATGGAAGaGCATTTCAAACCAAATATCCAACTTATTCCACCAAAAG
CTACTGCTAATGTGTTTGCAGTTTTACCAAATCAGAATCAGAATGAAAGC
GAAAACACAACAACTTTCAATGCACCTTCCCTTTTTTCAAATAATGTACA
ACAAACAACTGACAATACGTCACATCAAGTCAGAAATAATGAACATATGG
GTGCTACGCAAAGTCTTTCCTTTGCAAACATTCCTGGTAGAAATCATGAA
GTGACTGTAACCTCAGACCAGCCTAGATTTCCTGCACCTGAAGATGCCCA
GCATCAGTCTCAAGCACCAACCATCTTCAGTGCTCCACTGAACAGCTCCA
ACCTATTATCTTCTGGTCAACCACCAGAGCAAGATCAACAACAACCACCA
CATGATGGCGCCTCAAATAAGGAAAATAACACCACACAGGATCACACCAC
ACAGGATCACACCAGCGGACAAACATATAGTCATGGGATCGGTATTGTTA
CATCAAACCCTTCATCCCAGCAACAATATTCTCAAAGCAATTCAGTTCAG
CCGCTTGTTTACTCTCAAACTTCTTCAAATGTTCAATATACACAACAGAG
TCAGGCAACCAATGCTTATCAAGTAATGAAATTTGTTCTTTTGACGCAAT
AAATGTCTTCATCACAGAAAATACCTGATGAACTTTCCACAGACCTATCT
GTAAAGATGGAAGaGCATTTCAAACCAAATATCCAACTTATTCCACCAAA
AGCTACTGCTAATGTGTTTGCAGTTTTACCAAATCAGAATCAGAATGAAA
GCGAAAACACAACAACTTTCAATGCACCTTCCCTTTTTTCAAATAATGTA
CAACAAACAACTGACAATACGTCACATCAAGTCAGAAATAATGAACATAT
GGGTGCTACGCAAAGTCTTTCCTTTGCAAACATTCCTGGTAGAAATCATG
AAGTGACTGTAACCTCAGACCAGCCTAGATTTCCTGCACCTGAAGATGCC
CAGCATCAGTCTCAAGCACCAACCATCTTCAGTGCTCCACTGAACAGCTC
CAACCTATTATCTTCTGGTCAACCACCAGAGCAAGATCAACAACAACCAC
CACATGATGGCGCCTCAAATAAGGAAAATAACACCACACAGGATCACACC
ACACAGGATCACACCAGCGGACAAACATATAGTCATGGGATCGGTATTGT
TACATCAAACCCTTCATCCCAGCAACAATATTCTCAAAGCAATTCAGTTC
AGCCGCTTGTTTACTCTCAAACTTCTTCAAATGTTCAATATACACAACAG
AGTCAGGCAACCAATGCTTATCAAGTAATGAAATTTGTTCTTTTGACGCA
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043100-exon-sc0003916-1491911889:11323..11532 | TCONS_00043100-exon-sc0003916-1491911889:11323..11532 | Clytia hemisphaerica | exon |
| TCONS_00043100-exon-sc0003916-1510915933:11323..11532 | TCONS_00043100-exon-sc0003916-1510915933:11323..11532 | Clytia hemisphaerica | exon |
| TCONS_00043100-exon-sc0003916-1575043694:11323..11532 | TCONS_00043100-exon-sc0003916-1575043694:11323..11532 | Clytia hemisphaerica | exon |
| TCONS_00043100-exon-sc0003916-1491911889:15261..15980 | TCONS_00043100-exon-sc0003916-1491911889:15261..15980 | Clytia hemisphaerica | exon |
| TCONS_00043100-exon-sc0003916-1510915933:15261..15980 | TCONS_00043100-exon-sc0003916-1510915933:15261..15980 | Clytia hemisphaerica | exon |
| TCONS_00043100-exon-sc0003916-1575043694:15261..15980 | TCONS_00043100-exon-sc0003916-1575043694:15261..15980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003916 | supercontig | sc0003916:11323..15980 + |
Blast
The following BLAST results are available for this feature:
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