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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043090 ID=TCONS_00043090|Name=TCONS_00043090|organism=Clytia hemisphaerica|type=transcript|length=509bp
CTAAGGgtaggaaaagaaaaatcaaaataccaaaaatgctaaaaaatgac
tAATAGACTGTTGATGGTAAAACCATTAGCCTCTTTTAcaagtttgattt
ttaaagGTAAATGAAAATCTTGTTTAGAGAGTGGACATAAGAGCCAGATT
TTCAGTACTTTAGCTTGATTGGATCACTAAAAAGCTTCAGagaatttttg
cttagctttggGTGCGCTAGACTTTCATCATGACGCGACAATGGGCAGAC
AATCATATTGAGAAAAAACCGGGTAATCGCTACAATCCAAGCCTTCAAAA
CAAACTGGCTCCTGTTTACAAACTATGGCTTGGAGTGGTTGGAATTTTTT
CTTGTATCCTTGGTGTAGCCAGTATCTGTGTGTGCGCTGTATTGAAGAGT
AAAGATGATCAACTGGATAATGAGTTCTATCAACTCTGGGTCGGAATACC
GCTTGTAATATATGCTTTGTTTGCGATACTCAATGCCATTTTCCCTGACA
AAAAATTGG Run BLAST on NCBI transcript from alignment at sc0003911:512..3758- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043090 ID=TCONS_00043090|Name=TCONS_00043090|organism=Clytia hemisphaerica|type=transcript|length=3247bp|location=Sequence derived from alignment at sc0003911:512..3758- (Clytia hemisphaerica)
CTAAGGGTAGGAAAAGAAAAATCAAAATACCAAAAATGCTAAAAAATGAC
TAATAGACTGTTGATGGTAAAACCATTAGCCTCTTTTACAAGTTTGATTT
TTAAAGGTAAATGAAAATCTTGTTTAGAGAGTGGACATAAGAGCCAGATT
TTCAGTACTTTAGCTTGATTGGATCACTAAAAAGCTTCAGAGAATTTTTG
CTTAGCTTTGGGTGCGCTAGACTTTCATCATGACGCGACAATGGGCAGAC
AATCATATTGAGAAAAAACCGGTGAGTAAATTTTAAGCTTTCGCAGGAGA
GTACTAAAGGTACTTAGGTAAGATTAGGTATATTGGGGTATACAGTATAC
CCTCGCTTATTCGAACTTTTATTATTCGAATCCCTCTATAATTCGAACTA
ATTCTCAGACCCCGTCAAGGAGAAACTCTCTTTAATTACTTTCTATGATT
TGAATATTTCTGTAATTCGATCAAATGAGATTTCCTGTTCGAATTCGAAT
TGGTGAGAGTCAACAAATAGAGGTCGTTTTCTTACCTAAAGTTTCTCTGA
GGGCTACAAGAAAATTAAAAAGTTTCATCAGTTTCTTTCTAAAATTGGTT
CCCTTTTGTGGTCTTTTAAGGGTGCAAAAAGCACAAAAAGGACTAGTTAT
CATATTTAGAAAAACCTTACAATAATTCCCTGACATTTGCAGAGATTTCC
CTGACCTAATCTTTGTATTTCTTCATAGGGTAATCGCTACAATCCAAGCC
TTCAAAACAAACTGGCTCCTGTTTACAAACTATGGCTTGGAGTGGTTGGA
ATTTTTTCTTGTATCCTTGGTGTAGCCAGTATCTGTGTGTGCGCTGTATT
GAAGAGTAAAGATGATCAACTGGATAATGAGTTCTATCAACTCTGGGTCG
GAATACCGGTAAATATTTACATTATTTAAAGACCGGTCTCCACTTGCGTG
CGCTGCGATTGCTCCTTTTGGTTAATACTTTTTGCTTGGATAAAAGATTA
CCTTATTGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATTTTGGCCAAG
TTACGAATATTTTTCCCCGACGAAAATTTTCCCCAGCCTGAATGCGTTTA
CCAACTACCAGCAACTGACGAATATTTTTCCCCGACGAAAATTTTCCCCG
ACGAAAATTTTCCCTGACGAAGTTTTCCCCAATAAGGTAAGTCATAAAAA
TGTAGCGCGCGCTCAAAAAAAAGTTCACATTTCAACTTTTTGCAACCGTT
ACGTCAGATCGCGCCAATGGAGTTGCTTCATTTTTCTTTTGAAAAGAAAG
CGTAAGCTTTGCTCGACAAAATGGCGATCGAAGCGTGCGCAAGTGGAGAC
CGGCCTTAACCCTTCAAACCCGGTGATATGTATACACATTTTGATTTTGC
CAATATACCGAGTCCCAGACTTAGGGCTTTAACTCCTGGCTACCTGATTT
TAAAAGTCGTAAACCAAATGCTTTTAGAAATACATTTTCAATGGTACCAA
AACCAATGTCTAGCTCTAAAGGTACAAGCTTTTATGCCAAGTTTGAAGTT
TGGGATTTCAAAGAAGTTGAAAGTTTCCACATTTTTTAAATTAAAAAAAT
GTTAATATAGAGTCACAAAGTGCTCAAGAAAATTCGAAAAAATTCGAGCG
AAATATCAAGAAGTAAAAGCTAACTTACAATTGCTACACGGTGTTTAATG
CTGGCTTAATCTTCAGACAATGCAGTATATTGCAGATTTTGAAGATTGCG
CTAATATGAAACATCGTTAGTTAGTTCTTTATTTCTTGATATCAATATAT
TTTACAAAATTGCCATTTTTAGAAACCACTGAGGTGAATTAGTCTATTTA
TGAAATTCCAAAATTTACGTCAAGGATATCATCCTATACCCGGGGGGAGG
GTACTAGGGTTGTGAGCTGACGGGGGGTGCCACCCGACTTTCGAACTTTG
GACCCTTACCGGGACTAAAAAGGAGAAAACAAAGGAAAATTTTGGGAATT
TTACGACCCTTAGCGGGACAAATTTGACCAATTTTGACCAAAATTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCC
CCCCCCCCTGGGATCCTATACCAGGCTCCTGATGACTTTCAAAGAGATAA
TACTAAAGTAATGGAAAATAAAGTCCCTTTCCGATCTTCTAGATGGCCTA
TCGGTCGAGGAGATTTCGGAAGGTTTTAGACTTTAATCACTTTAGCTAAC
ACTCGCTAATCCGAATTCGAACATGGAGTACAATTTGTTTGAAATACAGA
GAGATCTATTTTACAAGGATTCTTGTTAGACGGGAACTTTATTGAAAATA
ATTGATTAAAACTGATTAAAAGCTCGCATGGATATCCGTCCGCATACTCT
TGTCTCCCGAATAGACGTCCCCCCCAAATCCACCCCCTCCNAGGGGGTAA
AAAGTTGAAATTTTCCTATTTTTCCGACCCTTAGTGGGACTGAAATTTGA
TTTTCTGATTTTTCCGACCCTTAACGGGACTTTGGAAGTCCAAAAAGGTA
CCCTTAAGGGCAGCACATACCGTACCCTCCATTTGCCTAAGTACCCCCCC
CTGGGATCCTATACCAGGCTCCTGATGACTTTCAAAAAGATAATACTAAA
GTAATGGAAAATAAAGTCCCTTTCCAACCTTCTAGATGGCCTATCGACCG
AGGAGATTTCGGAAGGTTTTAGACTTTAATCACTTTAGCTAACACTCGCT
AATCCGAATTCGAACATGGAGTCCAATTTGTTTGAAATACAGAGAGATCT
ATTTTACGAGGATTCTTGTTAGACGGGAACTTTATTGAAAAATAATCGAT
TAAAAGTTCGCATGGATATCCGTTCGCTTAGCAAGAGTCTACTTTACTCA
TACATTTATATAACTGCTTTTATTATCTATCTATTTCAGCTTGTAATATA
TGCTTTGTTTGCGATACTCAATGCCATTTTCCCTGACAAAAAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043090-exon-sc0003911-1575043694:3488..3758 | TCONS_00043090-exon-sc0003911-1575043694:3488..3758 | Clytia hemisphaerica | exon |
| TCONS_00043090-exon-sc0003911-1575043694:2851..3030 | TCONS_00043090-exon-sc0003911-1575043694:2851..3030 | Clytia hemisphaerica | exon |
| TCONS_00043090-exon-sc0003911-1575043694:512..569 | TCONS_00043090-exon-sc0003911-1575043694:512..569 | Clytia hemisphaerica | exon |
| TCONS_00043090-exon-sc0003911-1510915933:3488..3758 | TCONS_00043090-exon-sc0003911-1510915933:3488..3758 | Clytia hemisphaerica | exon |
| TCONS_00043090-exon-sc0003911-1510915933:2851..3030 | TCONS_00043090-exon-sc0003911-1510915933:2851..3030 | Clytia hemisphaerica | exon |
| TCONS_00043090-exon-sc0003911-1510915933:512..569 | TCONS_00043090-exon-sc0003911-1510915933:512..569 | Clytia hemisphaerica | exon |
| TCONS_00043090-exon-sc0003911-1491911889:3488..3758 | TCONS_00043090-exon-sc0003911-1491911889:3488..3758 | Clytia hemisphaerica | exon |
| TCONS_00043090-exon-sc0003911-1491911889:2851..3030 | TCONS_00043090-exon-sc0003911-1491911889:2851..3030 | Clytia hemisphaerica | exon |
| TCONS_00043090-exon-sc0003911-1491911889:512..569 | TCONS_00043090-exon-sc0003911-1491911889:512..569 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003911 | supercontig | sc0003911:512..3758 - |
Blast
The following BLAST results are available for this feature:
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