TCONS_00043088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043088
Unique NameTCONS_00043088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1999

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043088 ID=TCONS_00043088|Name=TCONS_00043088|organism=Clytia hemisphaerica|type=transcript|length=1999bp
CTTTAATCGATTTTACTTAATAAAGGCAAAAGATCTTTCCGTTCGTCAGC
GAATATTTTCAACTAAATAAACATGGGTGTGATCGCAAAAGGACATGCCA
TCGGACATTTGGTCCTTGGCGCTATCCTTTTATTTTGTGCCCTTTTGATC
ATTATTTTGAGTGGTGTTATGGCAGGAAAAGCTGACGTCGGTGCCGTTTT
GGGGCCATGGTGGGTTGGTCTTATGATTATGATCCCTGGCATTTTGGGTG
TGGTAGCCGGTATCACCAAAAAGAAATGTCCTGCTGTTGGGTTCTTAGTC
TTGTCCATCATCATCCTCATTGTTGTCGGTATCATCACAGCTCTAATGGC
AATCGTTGTCGCCGTTATAGCTGTCGTAGCTGAAGTTGCCAAAGATTGTT
ATAAAATGCCATCAACTAACACCTGCAAATGCAACCACAAAGGAACTACA
TTTGACTTGCACGGTGTCAGTGGAAACGATTGTACCGTCATTCAAGACAT
CCATGGATTGGCTACTGGTGTTTTAGCTATGATGATCATTTCCTGTTTGG
TTTGTTTCGCTGGATCAATCCTCGGATGTGTTGCTGTCTGTTGTAATAAG
AGCAATGACCAACCAACCAACACCACAGTCATCATTCAACAAGGCCAGCC
ACAACCGCCACCACCAggccaacaacaacaaccaccccCATACGGACAAC
CAGAACCTGTCAAATATTAAACCCAAACAATCGTTCTCATTTCACTTGAC
TGGCACCTTATACGACAGCGCGTTCGTCAGGCGCCACTGTGGAAAAATGA
GAAGTGGCTGTATCTGTGTTATTGATGTCTTTATGGAAAGAATGGGAATT
GAGCATAGGTCATTCTGGTTTTTATCATGAAATAAATGCTCTTAAAAAGT
TTCTAGGATGCAACACAGACTCTCTCTCAGGATATATTTAGCTATTGCCT
TGTTTAGTAATATGTTTATTAATTGTGCATGTGTGCGTAAATTTTCCTCT
GTCAAATTGGGCTTATAAAAGGAAATTTTATCTTATTACAGAAACTGACT
TGCTAAACGGATTATAGCCTATAGTTATTAATTTTTTCGAATTGAAAAGC
GTTCAAAAAGATATCTTTGGGGAAAATAGATAAAAGTTACATTGTCTTTA
CACTCATTTCTCCCTTTATCAAGAGATCACCGAAAAGTCTTAAAACGGct
tattttgtattttcaaactGGGTCTAAACAAGATTTGCTATTTTTTAATC
CTTTTACCTTGCcctatgtaatagtttatttcataagtatattttacctt
tttctaCAATAATAAAAACAGAAATTTCCAATCACTAGCTCCTGATCCTC
GTTATACGTTCGAGGGTAAATCTTAGTTTTGCACATATTCTTTTTAACTT
ACACACCACAGCAAAAGTGCacactttgtttttgtttccgAGCATGTAAA
TATAGTTTTTTTAATAGTTTTAAccaaaaaaagctaaaattttcattgtt
tctaGGTGTTCACTATGATAAAACTTGCTATTTTATGGGTCAcaataaaa
tttaattaaaatttctATAACATGATAGTTTTTCCTAACTAATAACACCT
TCTTTTAGCTGCTAGTGCACCTTAAAAGCTGGCCGTGTTTCGACTGCTCG
TAATTTAATTGACAAAGAACTGATGAAAATTTCACGAAAACGAGGCCGAA
AGAAGGTTGTTATCCGTGTAAAtacgtttttatttttacataatgtAAAT
ATACGGTGTGTCTAAAGTACTACATTAAAGTAATCGCCATCTTTTTGACC
GTTACCCCACCCCTGTTTTTCATCTTGGGCCCCGAGGAGccctcatatgg
tccgaccaaTGACATGTGCAGCACTTAAAGGTAGATTTTTCAAGACCCcc
aaatgcactgtaaggctctgcttttgatagagtgcatCATGAGGTTCTCC
TTTTAGCTGGAGTCActacccttaccgggactaaaaaggagaaaacaaa
Run BLAST on NCBI

transcript from alignment at sc0003908:3984..8677-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043088 ID=TCONS_00043088|Name=TCONS_00043088|organism=Clytia hemisphaerica|type=transcript|length=4694bp|location=Sequence derived from alignment at sc0003908:3984..8677- (Clytia hemisphaerica)
CTTTAATCGATTTTACTTAATAAAGGCAAAAGATCTTTCCGTTCGTCAGC
GAATATTTTCAACTAAATAAACATGGGTGTGATCGCAAAAGGACATGCCA
TCGGACATTTGGTCCTTGGCGCTATCCTTTTATTTTGTGCCCTTTTGATC
ATTATTTTGAGTGGTGTTATGGCAGGAAAAGCTGACGTCGGTGCCGTTTT
GGGGCCATGGTGGGTTGGTCTTATGGTAAGTTCAAAAAATTTCTTTTATT
TTTTTCTTATTTTCTTTATCTTTTTATAATATTTTTTTCCAGTATTTTCA
TATTTCTCTAAGTTACATTATTATGTAATGTAAGGGAAATATTTTTTTTC
GCATATTAATTATAAATCTTAATGTGTTTTCACGGAACGATTGTGGAGAC
ATTCTAATTGTACAAAGCCAAGTCAGTTTTTCTTGGTTTACTTATATAAT
CTACAGATTTGAAATAAGGACCAACATAAATTACCCCCTGTCCCATCAAA
ACGTACATTAAATTCAAATTCGTCGTCATCGCAATGTTATTTTAATTAGA
TAACCCAGATTTCCCAAATTCATATTTAGATTCAAATTCTTCTTTTAACT
ATACTGTATTTTTAATTATTTATTGAAAATGTAAGATCTTTCCGATTTTC
ACAAAACATGGTCTTTCATGTGGTTTAAAAACTGTGCACAATTTTGTTTT
TCATATATTCGCACAATTCGCCCTCGTTACCGTCCTTGTTGGATTTTCAA
ATATTCAGAATATTTTTTTTCCTTAATTTCTGATTTTCAACAATTTTTCA
AAAACAAATAAGTATATAATATAATAAAAATTATCTTTAAGAACTAAAGA
TTGAAAGTAAATGTATAAAGAATAACAGGGATATTTTGGCAATTCACCTT
ACCTTCTCGAACAATTTTTCTGATGCTCTGGGGGAATGTTAAAATTCTGA
GAAACCATTTCCGAAAAATGGATTAAAAGAACGTTTTATACTTTGAAAAA
AAAAAAACATTAAAACCCTTAAAACAAGCAATTTTTAAGAAATTATTCCC
GAATGCTGAAAATAAAACACTTTAAGAACATTTTAAGCCTAAAACTAAAA
AAGCTAAGAACATGAAATGATCTCAAAATTTTTACGTTCTAATAAAAAAA
AAGTTTATATTTTAATGAGGACAGTTCTAAATTTTTTTTTATCTAATCNA
CGTTCTAATAAAAAAAAAGTTTATATTTTAATGAGGACAGTTCTAAATTT
TTTTTTATCTAATCTCAAAGAAGTGGGATGAAACTAAAAAAATAAGAGGA
AACCTCTGAAAATCTTTTTTTTGTTTCCCACTTAACGCCTACTTTTAGTT
GTATAAACATTCAAATTGAAACATTTTCAAGACTCTTTAAGTACATGTTT
TTTAAAGCCCTTAGATCTTCTTAACTTTTGAGCCTAAAAGGTTCTTAAAA
TCTTCTTAATTTCACCATTTTGTGAGATTTCTTTTCGCGATTTCCTAAGA
AAAGTCCAAAAATCCTTTAAATTTAAAGCCCACCCCTAAGACTAGACCCT
AAAATGTTCTTAACTTGTTCTTAAATGTGTATAATAAAACGCTGAAATTC
TTGCTCTTTTACATTATCAGCTTAAAATGTAAATATACACTGTATTTTAA
CCTAATCCTTTATACTCGTTTAGATTATGATCCCTGGCATTTTGGGTGTG
GTAGCCGGTATCACCAAAAAGAAATGTCCTGTAAGTATATAAACAACAGA
AACCGATTACTTTCAAAGTGAGTGCCTTGATGGTTTTCCAGATATTAACC
CCAAGTGCAACTTACATTGTAGTATCATTGTAAAATCAGCCGCGACAAAA
TGGCGTGTTTATTCAATTTCTAAATATACATTATAGAGCACACAATGCAT
TCCTCCTAAATTCATCCGACCTAGAATATTCTTTTTAAACTCCTTTCTTC
TTTTCAACAACAGGCTGTTGGGTTCTTAGTCTTGTCCATCATCATCCTCA
TTGTTGTCGGTATCATCACAGCTCTAATGGCAATCGTTGTCGCCGTTATA
GCTGTCGTAGCTGAAGTTGCCAAAGATTGTTATAAAATGCCATCAACTAA
CACCTGCAAATGCAACCACAAAGGTACTGTTAGGTATTAAGTCTCGAAGC
AATGAATCTTTTTTTATGCTGAACCTATGCTTAGTTCGTGTGGACAATAT
TCTTAATCGTTTCACATACCCCTTTCTCACAGACCCAGTAGGATTTTTTC
AGCCAGTAGGAATAAAAATGACTGTCTAAAACTCGATGAAGATTGATATT
CCCATATCTTTTATGGCTGGGGATTTCAATTCTTTTGTTTTCAAGTCAGA
AAGTTCAGTGGGGATATGAAAAAATTTTCCAGTGGGAAGGGGTCCCAGAA
GGTCTGCTAGAAGAGGGTGTTTGAACCATCATTTCTGAATCTTTTGTATC
CAGAAAACTTGTATAAAGAACGTTCGTTTTTTCTTCAGGAACTACATTTG
ACTTGCACGGTGTCAGTGGAAACGATTGTACCGTCATTCAAGACATCCAT
GGATTGGCTACTGGTGTTTTAGCTATGATGATCATTTCCTGTTTGGTTTG
TTTCGCTGGATCAATCCTCGGATGTGTTGCTGTCTGTTGTAATAAGGTAA
TTTAAAGCAACCTAAAACTTATGTGCTCTTATGCCAGGGGGGTAATACCC
TTGCCGACCGGTGGTCTAAAAAATTTCCGTATTTTTTCCAAATTCCCCCA
AAAAGGTACCATACGAGGGACTAATTTTTCTATTTTGGTGTTTTGCAACC
CTACCTAGGACTGATGGAGGTGAAAAAGGATACCCTGACCAGCGGCACAT
TCTCGTACCCCTTTTTTTGCCCAATTAACCCCCATGACTATTATGAAACA
CTCTGGTGCCTATCATCGCGCACCCTTCTGATAGAATTTTTTAACTTGAT
ACTAAAGTAAAGGAACTTTTAAATGAATTTGTAAAATGTCAAGTATTGTC
TCGGAAATTAGACCCTTACTCTCAGAAATGTCTTGATCAGAATTAGAATC
TTTTGATACCCAAATGAATTATCAATTTTTTCTCAGCATTCGTCTTTAAA
TGGTTTATCTTGTTATCCCTTTTGATGTATTTTTGATTTTTTACTCATGC
GTTTTTTGAGAATATAATCAGCCGAAAATTCGAGTAGTCAGTCAAATACG
CTTAAAATCTTAATATGTTTTTCTTTGTTCCCCATGACAGAGCAATGACC
AACCAACCAACACCACAGTCATCATTCAACAAGGCCAGCCACAACCGCCA
CCACCAGGCCAACAACAACAACCACCCCCATACGGACAACCAGAACCTGT
CAAATATTAAACCCAAACAATCGTTCTCATTTCACTTGACTGGCACCTTA
TACGACAGCGCGTTCGTCAGGCGCCACTGTGGAAAAATGAGAAGTGGCTG
TATCTGTGTTATTGATGTCTTTATGGAAAGAATGGGAATTGAGCATAGGT
CATTCTGGTTTTTATCATGAAATAAATGCTCTTAAAAAGTTTCTAGGATG
CAACACAGACTCTCTCTCAGGATATATTTAGCTATTGCCTTGTTTAGTAA
TATGTTTATTAATTGTGCATGTGTGCGTAAATTTTCCTCTGTCAAATTGG
GCTTATAAAAGGAAATTTTATCTTATTACAGAAACTGACTTGCTAAACGG
ATTATAGCCTATAGTTATTAATTTTTTCGAATTGAAAAGCGTTCAAAAAG
ATATCTTTGGGGAAAATAGATAAAAGTTACATTGTCTTTACACTCATTTC
TCCCTTTATCAAGAGATCACCGAAAAGTCTTAAAACGGCTTATTTTGTAT
TTTCAAACTGGGTCTAAACAAGATTTGCTATTTTTTAATCCTTTTACCTT
GCCCTATGTAATAGTTTATTTCATAAGTATATTTTACCTTTTTCTACAAT
AATAAAAACAGAAATTTCCAATCACTAGCTCCTGATCCTCGTTATACGTT
CGAGGGTAAATCTTAGTTTTGCACATATTCTTTTTAACTTACACACCACA
GCAAAAGTGCACACTTTGTTTTTGTTTCCGAGCATGTAAATATAGTTTTT
TTAATAGTTTTAAGCCNTTTGTTTTTGTTTCCGAGCATGTAAATATAGTT
TTTTTTAATAGTTTTAAGCCAAAAAAAGCTAAAATTTTCATTGTTTCTAG
GTGTTCACTATGATAAAACTTGCTATTTTATGGGTCACAATAAAATTTAA
TTAAAATTTCTATAACATGATAGTTTTTCCTAACTAATAACACCTTCTTT
TAGCTGCTAGTGCACCTTAAAAGCTGGCCGTGTTTCGACTGCTCGTAATT
TAATTGACAAAGAACTGATGAAAATTTCACGAAAACGAGGCCGAAAGAAG
GTTGTTATCCGTGTAAATACGTTTTTATTTTTACATAATGTAAATATACG
GTGTGTCTAAAGTACTACATTAAAGTAATCGCCATCTTTTTGACCGTTAC
CCCACCCCTGTTTTTCATCTTGGGCCCCGAGGAGCCCTCATATGGTCCGA
CCAATGACATGTGCAGCACTTAAAGGTAGATTTTTCAAGACCCCCAAATG
CACTGTAAGGCTCTGCTTTTGATAGAGTGCATCATGAGGTTCTCCTTTTA
GCTGGAGTCACTACCCTTACCGGGACTAAAAAGGAGAAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026826XLOC_026826Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043088-exon-sc0003908-1575043694:8453..8677TCONS_00043088-exon-sc0003908-1575043694:8453..8677Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1575043694:6948..7004TCONS_00043088-exon-sc0003908-1575043694:6948..7004Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1575043694:6555..6714TCONS_00043088-exon-sc0003908-1575043694:6555..6714Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1575043694:6032..6189TCONS_00043088-exon-sc0003908-1575043694:6032..6189Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1575043694:4565..5437TCONS_00043088-exon-sc0003908-1575043694:4565..5437Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1575043694:3984..4509TCONS_00043088-exon-sc0003908-1575043694:3984..4509Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1510915933:8453..8677TCONS_00043088-exon-sc0003908-1510915933:8453..8677Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1510915933:6948..7004TCONS_00043088-exon-sc0003908-1510915933:6948..7004Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1510915933:6555..6714TCONS_00043088-exon-sc0003908-1510915933:6555..6714Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1510915933:6032..6189TCONS_00043088-exon-sc0003908-1510915933:6032..6189Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1510915933:4565..5437TCONS_00043088-exon-sc0003908-1510915933:4565..5437Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1510915933:3984..4509TCONS_00043088-exon-sc0003908-1510915933:3984..4509Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1491911889:8453..8677TCONS_00043088-exon-sc0003908-1491911889:8453..8677Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1491911889:6948..7004TCONS_00043088-exon-sc0003908-1491911889:6948..7004Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1491911889:6555..6714TCONS_00043088-exon-sc0003908-1491911889:6555..6714Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1491911889:6032..6189TCONS_00043088-exon-sc0003908-1491911889:6032..6189Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1491911889:4565..5437TCONS_00043088-exon-sc0003908-1491911889:4565..5437Clytia hemisphaericaexon
TCONS_00043088-exon-sc0003908-1491911889:3984..4509TCONS_00043088-exon-sc0003908-1491911889:3984..4509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003908supercontigsc0003908:3984..8677 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7851	9.15994	18.3323	20.6004	459.727	266.835	246.099	252.921	280.197	332.479	241.441	287.35	48.1922	41.4338	3.51246	3.68431	12.2792	13.539	108.669	80.9504	78.3747	74.8093	35.8491	42.9702	18.827	32.0637	128.586	127.559	0.736862	0.766157
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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