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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043083 ID=TCONS_00043083|Name=TCONS_00043083|organism=Clytia hemisphaerica|type=transcript|length=715bp
ttttaatatcttttcaaatcctttttttttaatttttaaaagaaaaatac
acacgcttttttaaaataagaatatcagggtgaaaatttcttccggaAAG
AGCccaatttgataagaatacagttaCAGTCACTTGTATTTGGTCAACTT
TGatgtagaaataaaaaaacgtgtatgctaacataaaaaacatatcaaaa
gttatatacaaaaaataccaaaatgtaGTATCCAgacaaaaaattcagaa
attttataGCACACTGAAAATTGTAAATCCCATCTTGAATCTTTCCAGAA
TTAACCAATTTCATGTTGCAAAAGTCAGCACTTTTACCCCCTGCTGTGAA
AGGTCAACTTATAAAAACCTCACTCGATAATTTTACTCTTTTCAGGTTCT
GACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGGCTGATGG
CAACCACCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCTTTGGACG
AAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGACGTGGT
TTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGTGACAGC
TGTTGCCAAAAAACGAAAAGGGGCCCGGGAGTGCCAGGCGGAACAAAAAG
AAGATTGTACCTTAGATGGAATTGATAAAGAAAACGTACCTACACAACCG
AAGACtaaaaaagca Run BLAST on NCBI transcript from alignment at sc0003905:6374..8743- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043083 ID=TCONS_00043083|Name=TCONS_00043083|organism=Clytia hemisphaerica|type=transcript|length=2370bp|location=Sequence derived from alignment at sc0003905:6374..8743- (Clytia hemisphaerica)
TTTTAATATCTTTTCAAATCCTTTTTTTTTAATTTTTAAAAGAAAAATAC
ACACGCTTTTTTAAAATAAGAATATCAGGGTGAAAATTTCTTCCGGAAAG
AGCCCAATTTGATAAGAATACAGTTACAGTCACTTGTATTTGGTCAACTT
TGATGTAGAAATAAAAAAACGTGTATGCTAACATAAAAAACATATCAAAA
GTTATATACAAAAAATACCAAAATGTAGTATCCAGACAAAAAATTCAGAA
ATTTTATAGCACACTGAAAATTGTAAATCCCATCTTGAATCTTTCCAGAA
TTAACCAATTTCATGTTGCAAAAGTCAGCACTTTTACCCCCTGCTGTGAA
AGGTCAACTTATAAAAACCTCACTCGATAATTTTACTCTTTTCAGGTTCT
GACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGGCTGATGG
CAACCACCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCTTTGGACG
AAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGACGTGGT
TTTTTCTGGTATCCACATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCAATGTCAGGGATAAAAGTTGGTCGACGTGGTTTTTTCTGGTATC
CACATCACAAGAAATACTACGAAGCTTGCGTGACAGCTGTTGCCAAAAAA
CGAAAAGGTAATTGTTCAGTCCAATAATTTTGATTGATATTTGTGACTAC
CATTATACTTTTGAATCCAAGACGGTGCTAATGGACCAGATAAACTTCCA
TCTCTTCTTTGTATTTTCATCTTCAATCAAAGCCTCAGCACCTGTCAAGA
GATAAATTCGTCATTCGTTTAATTAAAAGTGACATCTTAACTGCTAAGGA
CTTAACTTTAAGCCCAGGTGGTATTTACATTTGGTAAGATTTTCAATCTA
GAGGGTCTATTGAGAAAGACTAGACTGAAGAATGAAAAATATTTCATCTT
TCAGGGGCCCGGGAGTGCCAGGCGGAACAAAAAGAAGATTGTACCTTAGA
TGGAATTGATAAAGGTATTGATTCTATCATCTTAGAAAACTTTTTATTGT
TTGTAGCTCTTTGGCACTAGCTTAACCTTTCAAATTAAAATCTCAATCTT
TGATTCCCTTGCTAAGGAGCAATGCACAAATACCATGTAATTCTATAAAC
ATATTTTCAACTATCTTTTTCTTTTTCAACTCAAGAAAACGTACCTACAC
AACCGAAGACTAAAAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043083-exon-sc0003905-1575043694:8178..8743 | TCONS_00043083-exon-sc0003905-1575043694:8178..8743 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1575043694:6937..6990 | TCONS_00043083-exon-sc0003905-1575043694:6937..6990 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1575043694:6580..6639 | TCONS_00043083-exon-sc0003905-1575043694:6580..6639 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1575043694:6374..6408 | TCONS_00043083-exon-sc0003905-1575043694:6374..6408 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1510915933:8178..8743 | TCONS_00043083-exon-sc0003905-1510915933:8178..8743 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1510915933:6937..6990 | TCONS_00043083-exon-sc0003905-1510915933:6937..6990 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1510915933:6580..6639 | TCONS_00043083-exon-sc0003905-1510915933:6580..6639 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1510915933:6374..6408 | TCONS_00043083-exon-sc0003905-1510915933:6374..6408 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1491911889:8178..8743 | TCONS_00043083-exon-sc0003905-1491911889:8178..8743 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1491911889:6937..6990 | TCONS_00043083-exon-sc0003905-1491911889:6937..6990 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1491911889:6580..6639 | TCONS_00043083-exon-sc0003905-1491911889:6580..6639 | Clytia hemisphaerica | exon |
| TCONS_00043083-exon-sc0003905-1491911889:6374..6408 | TCONS_00043083-exon-sc0003905-1491911889:6374..6408 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003905 | supercontig | sc0003905:6374..8743 - |
Blast
The following BLAST results are available for this feature:
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