TCONS_00043077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043077
Unique NameTCONS_00043077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043077 ID=TCONS_00043077|Name=TCONS_00043077|organism=Clytia hemisphaerica|type=transcript|length=289bp
AACACAAATTTACTAGAATGTAACAAATCACAATTAAAAGTAGGCAAGAc
aatcaaattaaaaacaaactagTAAGCAGAAGCAGTTAAAATAAGTCATA
GTTTTCACTTTCTCATTTACCATAAGTGTAGGAAGAATTTTCAACTAATA
TTCCAGGTCCTCTCACATATTGAAAGCACGGCTCCTCTGAAATGTTGTCT
AAGTAAGAAATTCAATAAGCTAAATAGAggaaattcaatttcaaagtaTG
ACAATCTGACAAGTTGGATAACAGTGATAGGAATAGTGC
Run BLAST on NCBI

transcript from alignment at sc0003902:3948..4236

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043077 ID=TCONS_00043077|Name=TCONS_00043077|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at sc0003902:3948..4236 (Clytia hemisphaerica)
GCACTATTCCTATCACTGTTATCCAACTTGTCAGATTGTCAtactttgaa
attgaatttccTCTATTTAGCTTATTGAATTTCTTACTTAGACAACATTT
CAGAGGAGCCGTGCTTTCAATATGTGAGAGGACCTGGAATATTAGTTGAA
AATTCTTCCTACACTTATGGTAAATGAGAAAGTGAAAACTATGACTTATT
TTAACTGCTTCTGCTTActagtttgtttttaatttgattgTCTTGCCTAC
TTTTAATTGTGATTTGTTACATTCTAGTAAATTTGTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026819XLOC_026819Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043077-exon-sc0003902-1491911889:3948..4236TCONS_00043077-exon-sc0003902-1491911889:3948..4236Clytia hemisphaericaexon
TCONS_00043077-exon-sc0003902-1510915933:3948..4236TCONS_00043077-exon-sc0003902-1510915933:3948..4236Clytia hemisphaericaexon
TCONS_00043077-exon-sc0003902-1575043694:3948..4236TCONS_00043077-exon-sc0003902-1575043694:3948..4236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003902supercontigsc0003902:3948..4236 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17078	1.44866	1.93877	0.488296	0.595377	0.12737	1.61373	1.93135	1.32506	1.56535	0.532907	3.18285	2.24475	0.898172	1.34583	2.53274	1.73579	1.6031	0.570369	0.982211	3.2483	0	1.46557	2.16498	0	1.14662	2.24565	1.05247	1.47007	1.74134
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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