TCONS_00043072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043072
Unique NameTCONS_00043072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043072 ID=TCONS_00043072|Name=TCONS_00043072|organism=Clytia hemisphaerica|type=transcript|length=256bp
ACTAGTACATAAATATTAAGTGAGCTGAATATGCCGAGTAAGTTAAGTAA
GCTGAGTCGATTTAGTAAGCTGAGTAATCTGATAATGTCGCAAGTTCTGA
TTAGCCGAGTAATTTAGTAATTCCGAGTAATCTAGTAATTCCGAGTAATC
CAGTAATTCCGAGTAATCTAGTAATTCCGAGTAATCTAGTAATTCCGAGT
AATCTAGTAATTCCGAGTAATCTAGTAATGCCGAGTAATCTAGTAATGCC
GAGTNN
Run BLAST on NCBI

transcript from alignment at sc0003901:8127..8382

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043072 ID=TCONS_00043072|Name=TCONS_00043072|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at sc0003901:8127..8382 (Clytia hemisphaerica)
NNACTCGGCATTACTAGATTACTCGGCATTACTAGATTACTCGGAATTAC
TAGATTACTCGGAATTACTAGATTACTCGGAATTACTAGATTACTCGGAA
TTACTGGATTACTCGGAATTACTAGATTACTCGGAATTACTAAATTACTC
GGCTAATCAGAACTTGCGACATTATCAGATTACTCAGCTTACTAAATCGA
CTCAGCTTACTTAACTTACTCGGCATATTCAGCTCACTTAATATTTATGT
ACTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026814XLOC_026814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043072-exon-sc0003901-1491911889:8127..8382TCONS_00043072-exon-sc0003901-1491911889:8127..8382Clytia hemisphaericaexon
TCONS_00043072-exon-sc0003901-1510915933:8127..8382TCONS_00043072-exon-sc0003901-1510915933:8127..8382Clytia hemisphaericaexon
TCONS_00043072-exon-sc0003901-1575043694:8127..8382TCONS_00043072-exon-sc0003901-1575043694:8127..8382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003901supercontigsc0003901:8127..8382 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57698	1.3612	0.790243	0.773129	8.47089	2.97503	3.58925	4.20026	1.96237	1.45701	0.707106	0.929648	1.85671	0	0.396313	2.12652	2.6197	3.22213	2.9677	5.4346	3.57836	7.34982	5.05261	4.33471	0.749347	0.668774	3.96335	2.0427	4.79711	4.89623
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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