TCONS_00043071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043071
Unique NameTCONS_00043071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043071 ID=TCONS_00043071|Name=TCONS_00043071|organism=Clytia hemisphaerica|type=transcript|length=357bp
GGGTTTAGTAACCCTTTGGTCTTGAAATctgtaaaaagaaataaaaaagg
aatTTAGAAAGATGTATACTATTCATCATCATATCAATTGGAAATTAATa
agtcaaagaaaatatttacatgcaaagttattcaaaaaaaatcaaaaaaa
gccAGTCAAATTCATGACACATGATgctgataaaaataaatttcatttac
GAGAAAGCTCTTGACTATCTACTTACTGGGAACTTTTTTCCATGAAAACA
GTTAAAATCTGAGCAGAATTACTGTacgaaaagttttaaaaatagaaCAC
TTATAAAGGGTACAGAGATggtttctattatgaacagttaacaatagaaa
agacaaa
Run BLAST on NCBI

transcript from alignment at sc0003901:7568..7924

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043071 ID=TCONS_00043071|Name=TCONS_00043071|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at sc0003901:7568..7924 (Clytia hemisphaerica)
tttgtcttttctattgttaactgttcataatagaaaccATCTCTGTACCC
TTTATAAGTGttctatttttaaaacttttcgtACAGTAATTCTGCTCAGA
TTTTAACTGTTTTCATGGAAAAAAGTTCCCAGTAAGTAGATAGTCAAGAG
CTTTCTCgtaaatgaaatttatttttatcagcATCATGTGTCATGAATTT
GACTggctttttttgattttttttgaataactttgcatgtaaatattttc
tttgacttATTAATTTCCAATTGATATGATGATGAATAGTATACATCTTT
CTAAattccttttttatttctttttacagATTTCAAGACCAAAGGGTTAC
TAAACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026813XLOC_026813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043071-exon-sc0003901-1491911889:7568..7924TCONS_00043071-exon-sc0003901-1491911889:7568..7924Clytia hemisphaericaexon
TCONS_00043071-exon-sc0003901-1510915933:7568..7924TCONS_00043071-exon-sc0003901-1510915933:7568..7924Clytia hemisphaericaexon
TCONS_00043071-exon-sc0003901-1575043694:7568..7924TCONS_00043071-exon-sc0003901-1575043694:7568..7924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003901supercontigsc0003901:7568..7924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.239714	0.935037	0.814251	0.531078	0	0	0.616381	0.288524	0.404005	0.250213	1.45718	0	0.637706	0.165566	0.272235	0.730376	0	0.553337	0	0.533305	0	1.69574	0	0.24988	0.257371	0	0.986088	2.10476	1.86245	2.16862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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