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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043069 ID=TCONS_00043069|Name=TCONS_00043069|organism=Clytia hemisphaerica|type=transcript|length=1074bp
GCCCTGGTCGTGTCCGACGTAGAGATGCTATTAGAAAGACGTGGtggaaa
gaatgtttcagcagCGAAAAGaTCACACTAGCCTGTTTCTTCATCACTGA
CGCCGTCAACAACCAGTCTAAATTCCATTTACAATTACAACGTGAACGAA
AACACCATGGCGACATTTTATTCCAGCCTCTTTCTGGTGGAGTCGAATTC
GGATACCGGTTTATTTACCACATGCTTTACGCTATTAACAACTACTATTT
TGATTACGTCATTCGAATGGATGATGATGTATTCTTCTGTTTGTCCGAAT
TTCTCGCGCAATTACCTACTGCACCTTTAAAACGATTTCACTGGGGTTGG
GTACATTGTGAAAAATTCTTAACACGACCTGAGGAGAGTGTTATCATGTT
ttcttatgacgtcataaaagacTTTCTAAACCAAAAACCAAACAAATTAT
GGTGTCATCCATTTGCAGACCAAATGATTGCCATGTGGCTTGAAGCACTC
GATATGGGTCATATATTACGTCATGATTACCGGATACACCATCATCCAGT
TGTTCAAGAAATGCCAACTTTAAAAGATCGTCGTTACGTTTGTAGAGATT
ACTTAGCGATACATGGGTCAAGTCCTAaagatgttttaaatttttggaaa
accAAAGGTGATTTAGGCCCCAAAGACTTATACTCGATTGATCGATTAAC
AAGAAGTTGTCCTTCGACATTCTCTTTTGATTGGAACAGTTTAGGAATTT
GGCAATACAGACCAAAGAAATGTATAACAAAACCGGTTTGGAATACTAGA
AAACATCAGACTAAAGATGGAATGTATGTGGGACGTCTTGGGTCTTCATT
CAATAAAGCTCAGAAAAAGATTaataaacctttaaaaaaagtttatatcA
AAGACGTCTAAGCCTCTCGTACGGggtcatccatatagtacgtacgcaaa
gatttccCAGATATCTGTTTAAAATTGTGTTGATCGGAGAAGATGAATCT
CGGATTTTCAAacatgtgaaaaaaaatcactacagtatatggcccccaaa
acggagacggcccccaaaacggag Run BLAST on NCBI protein sequence of TCONS_00043069-protein >TCONS_00043069-protein ID=TCONS_00043069-protein|Name=TCONS_00043069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
PGRVRRRDAIRKTWWKECFSSEKITLACFFITDAVNNQSKFHLQLQRERK
HHGDILFQPLSGGVEFGYRFIYHMLYAINNYYFDYVIRMDDDVFFCLSEF
LAQLPTAPLKRFHWGWVHCEKFLTRPEESVIMFSYDVIKDFLNQKPNKLW
CHPFADQMIAMWLEALDMGHILRHDYRIHHHPVVQEMPTLKDRRYVCRDY
LAIHGSSPKDVLNFWKTKGDLGPKDLYSIDRLTRSCPSTFSFDWNSLGIW
QYRPKKCITKPVWNTRKHQTKDGMYVGRLGSSFNKAQKKINKPLKKVYIK
DV Run BLAST on NCBI transcript from alignment at sc0003900:214..1489+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043069 ID=TCONS_00043069|Name=TCONS_00043069|organism=Clytia hemisphaerica|type=transcript|length=1276bp|location=Sequence derived from alignment at sc0003900:214..1489+ (Clytia hemisphaerica)
GCCCTGGTCGTGTCCGACGTAGAGATGCTATTAGAAAGACGTGGtggaaa
gaatgtttcagcagCGAAAAGGTATTAAGTAGTGTCAAAGTGACGAGAAA
GTTTAGGATAGGGTTACGCTGAAGTGTTGTTTTTCAAGTACATTCGGAGG
AATCTAAGCACTCGTAGAAAACCTCTCTCtcttttttagttatttttgtt
AGGGGGagattgaaaaaatttctaatttctaaGGAACTACCAAAACCAAT
GattcttttttctctctttttagaTCACACTAGCCTGTTTCTTCATCACT
GACGCCGTCAACAACCAGTCTAAATTCCATTTACAATTACAACGTGAACG
AAAACACCATGGCGACATTTTATTCCAGCCTCTTTCTGGTGGAGTCGAAT
TCGGATACCGGTTTATTTACCACATGCTTTACGCTATTAACAACTACTAT
TTTGATTACGTCATTCGAATGGATGATGATGTATTCTTCTGTTTGTCCGA
ATTTCTCGCGCAATTACCTACTGCACCTTTAAAACGATTTCACTGGGGTT
GGGTACATTGTGAAAAATTCTTAACACGACCTGAGGAGAGTGTTATCATG
TTttcttatgacgtcataaaagacTTTCTAAACCAAAAACCAAACAAATT
ATGGTGTCATCCATTTGCAGACCAAATGATTGCCATGTGGCTTGAAGCAC
TCGATATGGGTCATATATTACGTCATGATTACCGGATACACCATCATCCA
GTTGTTCAAGAAATGCCAACTTTAAAAGATCGTCGTTACGTTTGTAGAGA
TTACTTAGCGATACATGGGTCAAGTCCTAaagatgttttaaatttttgga
aaaccAAAGGTGATTTAGGCCCCAAAGACTTATACTCGATTGATCGATTA
ACAAGAAGTTGTCCTTCGACATTCTCTTTTGATTGGAACAGTTTAGGAAT
TTGGCAATACAGACCAAAGAAATGTATAACAAAACCGGTTTGGAATACTA
GAAAACATCAGACTAAAGATGGAATGTATGTGGGACGTCTTGGGTCTTCA
TTCAATAAAGCTCAGAAAAAGATTaataaacctttaaaaaaagtttatat
cAAAGACGTCTAAGCCTCTCGTACGGggtcatccatatagtacgtacgca
aagatttccCAGATATCTGTTTAAAATTGTGTTGATCGGAGAAGATGAAT
CTCGGATTTTCAAacatgtgaaaaaaaatcactacagtatatggccccca
aaacggagacggcccccaaaacggag Coding sequence (CDS) from alignment at sc0003900:214..1489+ >TCONS_00043069 ID=TCONS_00043069|Name=TCONS_00043069|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at sc0003900:214..1489+ (Clytia hemisphaerica)
CCTGGTCGTGTCCGACGTAGAGATGCTATTAGAAAGACGTGGtggaaaga
atgtttcagcagCGAAAAGaTCACACTAGCCTGTTTCTTCATCACTGACG
CCGTCAACAACCAGTCTAAATTCCATTTACAATTACAACGTGAACGAAAA
CACCATGGCGACATTTTATTCCAGCCTCTTTCTGGTGGAGTCGAATTCGG
ATACCGGTTTATTTACCACATGCTTTACGCTATTAACAACTACTATTTTG
ATTACGTCATTCGAATGGATGATGATGTATTCTTCTGTTTGTCCGAATTT
CTCGCGCAATTACCTACTGCACCTTTAAAACGATTTCACTGGGGTTGGGT
ACATTGTGAAAAATTCTTAACACGACCTGAGGAGAGTGTTATCATGTTtt
cttatgacgtcataaaagacTTTCTAAACCAAAAACCAAACAAATTATGG
TGTCATCCATTTGCAGACCAAATGATTGCCATGTGGCTTGAAGCACTCGA
TATGGGTCATATATTACGTCATGATTACCGGATACACCATCATCCAGTTG
TTCAAGAAATGCCAACTTTAAAAGATCGTCGTTACGTTTGTAGAGATTAC
TTAGCGATACATGGGTCAAGTCCTAaagatgttttaaatttttggaaaac
cAAAGGTGATTTAGGCCCCAAAGACTTATACTCGATTGATCGATTAACAA
GAAGTTGTCCTTCGACATTCTCTTTTGATTGGAACAGTTTAGGAATTTGG
CAATACAGACCAAAGAAATGTATAACAAAACCGGTTTGGAATACTAGAAA
ACATCAGACTAAAGATGGAATGTATGTGGGACGTCTTGGGTCTTCATTCA
ATAAAGCTCAGAAAAAGATTaataaacctttaaaaaaagtttatatcAAA
GACGTCTAACCTGGTCGTGTCCGACGTAGAGATGCTATTAGAAAGACGTG
GtggaaagaatgtttcagcagCGAAAAGaTCACACTAGCCTGTTTCTTCA
TCACTGACGCCGTCAACAACCAGTCTAAATTCCATTTACAATTACAACGT
GAACGAAAACACCATGGCGACATTTTATTCCAGCCTCTTTCTGGTGGAGT
CGAATTCGGATACCGGTTTATTTACCACATGCTTTACGCTATTAACAACT
ACTATTTTGATTACGTCATTCGAATGGATGATGATGTATTCTTCTGTTTG
TCCGAATTTCTCGCGCAATTACCTACTGCACCTTTAAAACGATTTCACTG
GGGTTGGGTACATTGTGAAAAATTCTTAACACGACCTGAGGAGAGTGTTA
TCATGTTttcttatgacgtcataaaagacTTTCTAAACCAAAAACCAAAC
AAATTATGGTGTCATCCATTTGCAGACCAAATGATTGCCATGTGGCTTGA
AGCACTCGATATGGGTCATATATTACGTCATGATTACCGGATACACCATC
ATCCAGTTGTTCAAGAAATGCCAACTTTAAAAGATCGTCGTTACGTTTGT
AGAGATTACTTAGCGATACATGGGTCAAGTCCTAaagatgttttaaattt
ttggaaaaccAAAGGTGATTTAGGCCCCAAAGACTTATACTCGATTGATC
GATTAACAAGAAGTTGTCCTTCGACATTCTCTTTTGATTGGAACAGTTTA
GGAATTTGGCAATACAGACCAAAGAAATGTATAACAAAACCGGTTTGGAA
TACTAGAAAACATCAGACTAAAGATGGAATGTATGTGGGACGTCTTGGGT
CTTCATTCAATAAAGCTCAGAAAAAGATTaataaacctttaaaaaaagtt
tatatcAAAGACGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043069-exon-sc0003900-1491911889:214..284 | TCONS_00043069-exon-sc0003900-1491911889:214..284 | Clytia hemisphaerica | exon |
| TCONS_00043069-exon-sc0003900-1510915933:214..284 | TCONS_00043069-exon-sc0003900-1510915933:214..284 | Clytia hemisphaerica | exon |
| TCONS_00043069-exon-sc0003900-1575043694:214..284 | TCONS_00043069-exon-sc0003900-1575043694:214..284 | Clytia hemisphaerica | exon |
| TCONS_00043069-exon-sc0003900-1491911889:487..1489 | TCONS_00043069-exon-sc0003900-1491911889:487..1489 | Clytia hemisphaerica | exon |
| TCONS_00043069-exon-sc0003900-1510915933:487..1489 | TCONS_00043069-exon-sc0003900-1510915933:487..1489 | Clytia hemisphaerica | exon |
| TCONS_00043069-exon-sc0003900-1575043694:487..1489 | TCONS_00043069-exon-sc0003900-1575043694:487..1489 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003900 | supercontig | sc0003900:214..1489 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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