TCONS_00043066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043066
Unique NameTCONS_00043066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043066 ID=TCONS_00043066|Name=TCONS_00043066|organism=Clytia hemisphaerica|type=transcript|length=441bp
ttgtGATCGAAAACAGAGGATTCTAACATGTTTTTAGACGAACTTAATTT
TGACAATataaattttcttcatttaagACATACTAATTAATATGGGATGT
TGGTGGAAAAGGGAAGGGCTGGAAATGGGAAGGGCTGGAAGGGCGAGTTT
ATCGAAATTAAAATCGGAAGAACCATTACAAAAAAATCTGATTACGTAAC
GTAATATATATTATAGATCTTAAAAATTTGATTGTTTTATTAATTCATAA
CCCAGtgtaatttcaaataaaaaaaggagCTCTGAAATTAAAACTCGGTT
AAATTGTATATAACACAATGAATGTAGTGATTAGTACATTGGAATCTCCA
TAGCTCGAACCTCTCCTCAAATGTCCTCGTAACTGGTCCCTAAGTTGACA
CGACCTTAAAAACTAGTCTCTGTAACTCGAATCCtcaatgg
Run BLAST on NCBI

transcript from alignment at sc0003899:3261..3701

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043066 ID=TCONS_00043066|Name=TCONS_00043066|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at sc0003899:3261..3701 (Clytia hemisphaerica)
ccattgaGGATTCGAGTTACAGAGACTAGTTTTTAAGGTCGTGTCAACTT
AGGGACCAGTTACGAGGACATTTGAGGAGAGGTTCGAGCTATGGAGATTC
CAATGTACTAATCACTACATTCATTGTGTTATATACAATTTAACCGAGTT
TTAATTTCAGAGctcctttttttatttgaaattacaCTGGGTTATGAATT
AATAAAACAATCAAATTTTTAAGATCTATAATATATATTACGTTACGTAA
TCAGATTTTTTTGTAATGGTTCTTCCGATTTTAATTTCGATAAACTCGCC
CTTCCAGCCCTTCCCATTTCCAGCCCTTCCCTTTTCCACCAACATCCCAT
ATTAATTAGTATGTcttaaatgaagaaaatttatATTGTCAAAATTAAGT
TCGTCTAAAAACATGTTAGAATCCTCTGTTTTCGATCacaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026808XLOC_026808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043066-exon-sc0003899-1491911889:3261..3701TCONS_00043066-exon-sc0003899-1491911889:3261..3701Clytia hemisphaericaexon
TCONS_00043066-exon-sc0003899-1510915933:3261..3701TCONS_00043066-exon-sc0003899-1510915933:3261..3701Clytia hemisphaericaexon
TCONS_00043066-exon-sc0003899-1575043694:3261..3701TCONS_00043066-exon-sc0003899-1575043694:3261..3701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003899supercontigsc0003899:3261..3701 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.26845	1.30368	1.76944	2.39276	1.67523	1.91542	3.0986	1.93505	0.813625	2.00677	0.347335	1.02505	0.45919	0.941309	1.62559	2.8918	1.92209	0.86541	0.701346	0.318813	1.14929	1.75837	0	0.223782	4.92219	3.11272
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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