TCONS_00043064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043064
Unique NameTCONS_00043064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043064 ID=TCONS_00043064|Name=TCONS_00043064|organism=Clytia hemisphaerica|type=transcript|length=320bp
TTGAAATCAAGCTTAAGTGAGCTTTTTAAAGTCACAGAGGTTCAAAATGT
TCCAACTTGGACCGGCTGCCGGAAAATTTTGCCACTGAAACTGTCTCCTC
TAACAATCATCGGGAATGGTCGTTCACTCCCTGCATCACTGACTGATGCT
GATGAAGTCTACAATATCTTGATCAATTTGGGGAAGATCCTACGTAATCT
AGGACAACAAGATCAATGTGTTACGCTGACCCCCCTACTACAAAAGTACA
AAAGAGTACCCAAATGGAACAATGCGAATGCGAATTTCAGGGTTTTCGGT
GACACGGTATCGGCCTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00043064-protein

>TCONS_00043064-protein ID=TCONS_00043064-protein|Name=TCONS_00043064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
LKSSLSELFKVTEVQNVPTWTGCRKILPLKLSPLTIIGNGRSLPASLTDA
DEVYNILINLGKILRNLGQQDQCVTLTPLLQKYKRVPKWNNANANFRVFG
DTVSAF
Run BLAST on NCBI

transcript from alignment at sc0003899:1..320

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043064 ID=TCONS_00043064|Name=TCONS_00043064|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at sc0003899:1..320 (Clytia hemisphaerica)
AAAAAGGCCGATACCGTGTCACCGAAAACCCTGAAATTCGCATTCGCATT
GTTCCATTTGGGTACTCTTTTGTACTTTTGTAGTAGGGGGGTCAGCGTAA
CACATTGATCTTGTTGTCCTAGATTACGTAGGATCTTCCCCAAATTGATC
AAGATATTGTAGACTTCATCAGCATCAGTCAGTGATGCAGGGAGTGAACG
ACCATTCCCGATGATTGTTAGAGGAGACAGTTTCAGTGGCAAAATTTTCC
GGCAGCCGGTCCAAGTTGGAACATTTTGAACCTCTGTGACTTTAAAAAGC
TCACTTAAGCTTGATTTCAA

Coding sequence (CDS) from alignment at sc0003899:1..320

>TCONS_00043064 ID=TCONS_00043064|Name=TCONS_00043064|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0003899:1..320 (Clytia hemisphaerica)
AAAGGCCGATACCGTGTCACCGAAAACCCTGAAATTCGCATTCGCATTGT
TCCATTTGGGTACTCTTTTGTACTTTTGTAGTAGGGGGGTCAGCGTAACA
CATTGATCTTGTTGTCCTAGATTACGTAGGATCTTCCCCAAATTGATCAA
GATATTGTAGACTTCATCAGCATCAGTCAGTGATGCAGGGAGTGAACGAC
CATTCCCGATGATTGTTAGAGGAGACAGTTTCAGTGGCAAAATTTTCCGG
CAGCCGGTCCAAGTTGGAACATTTTGAACCTCTGTGACTTTAAAAAGCTC
ACTTAAGCTTGATTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026806XLOC_026806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043064-exon-sc0003899-1491911889:1..320TCONS_00043064-exon-sc0003899-1491911889:1..320Clytia hemisphaericaexon
TCONS_00043064-exon-sc0003899-1510915933:1..320TCONS_00043064-exon-sc0003899-1510915933:1..320Clytia hemisphaericaexon
TCONS_00043064-exon-sc0003899-1575043694:1..320TCONS_00043064-exon-sc0003899-1575043694:1..320Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043064-proteinTCONS_00043064-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003899supercontigsc0003899:1..320 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11119	0.934923	1.33169	1.32804	2.86415	4.09805	4.51958	5.38513	2.04677	4.3365	7.44689	6.26394	4.4634	4.41456	1.19051	1.75353	0.479815	0.827223	1.08602	2.00291	0.617977	1.35642	0.732849	1.56203	4.38421	8.07741	0	0	3.00563	1.30905
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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