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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043057 ID=TCONS_00043057|Name=TCONS_00043057|organism=Clytia hemisphaerica|type=transcript|length=645bp
GAAATTTATTCACTATATTTTTACCATACTTATTCATTATCATCActata
ttcatttttttatcgtttgcagaattggaaaaaaatcaaaaacagttGCT
TCATACGTTGATTGAAATTAGGCGCAACCAGCAACTCATTATCCAAAAGC
TAGACGTTGCTGGAACTTCTACAGATGCTGCTGGTTGTGGTCTTGATTTG
GAGCCATACACTAGAGATGAAGATTTTATGGAGTTCGATGCGCGAATTGC
TGATGAAgaggaaagaaagaaattgATATTGGCACTCTCACGCATCGGTG
GGAAAAACGCGAAGGAGACAACAAAATTTATCTTGAGAAGgGTGATGAGT
AATAAAGTGCAAGCCCTCTACAACAGGGAAGGCGTTAACCGAAAAGAGAA
AAAGGCATCAGCGGACAGGGTTAGGAAGAAGGCATTCAAAGAAACAAACT
TTTACAAAGTTGTAATCGacaCAGCTCTTTTAGTCAACAAAGATGCGACT
GAAAAAGAGATTGTGGATGTGATTGGCAAAGAGTTATGTACTGCCCCAGA
CAGACTTGGTGGGGGAGGAAGGGGGTCAGAAGAACAAACAGAGgattaat
tttcactttttgataaattatatttataaagaaaaaaaataaaaa Run BLAST on NCBI protein sequence of TCONS_00043057-protein >TCONS_00043057-protein ID=TCONS_00043057-protein|Name=TCONS_00043057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
NLFTIFLPYLFIIITIFIFLSFAELEKNQKQLLHTLIEIRRNQQLIIQKL
DVAGTSTDAAGCGLDLEPYTRDEDFMEFDARIADEEERKKLILALSRIGG
KNAKETTKFILRRVMSNKVQALYNREGVNRKEKKASADRVRKKAFKETNF
YKVVIDTALLVNKDATEKEIVDVIGKELCTAPDRLGGGGRGSEEQTED Run BLAST on NCBI transcript from alignment at sc0003891:3094..4716+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043057 ID=TCONS_00043057|Name=TCONS_00043057|organism=Clytia hemisphaerica|type=transcript|length=1623bp|location=Sequence derived from alignment at sc0003891:3094..4716+ (Clytia hemisphaerica)
GAAATTTATTCACTATATTTTTACCATACTTATTCATTATCATCActata
ttcatttttttatcgtttgcagaattggaaaaaaatcaaaaacagttGCT
TCATACGTTGATTGAAATTAGGCGCAACCAGCAACTCATTATCCAAAAGC
TAGACGTTGCTGGAACTTCTACAGATGCTGCTGGTTGTGGTCTTGATTTG
GAGCCATACACTAGAGATGAAGATTTTATGGAGTTCGATGCGCGAATTGC
TGATGAAgaggaaagaaagaaattggtaaatattttgatttcttgAACTT
CCAAGTTCTTTTAAACTTTGTAGAGCGCAAAATACCACAACAATCAGCAG
TATTTAATTCATGGAAAAAGATAAAAGTAATGAAAAATGGATCTTTTTTA
TGGCTGGTCATTTTTATAGGGTAAAAAACTATATTCCAACCTGCATTTTA
AAACACCtctgtgaaaaaatctttcatttctTATTGTTTAGATATTGGCA
CTCTCACGCATCGGTGGGAAAAACGCGAAGGAGACAACAAAATTTATCTT
GAGAAGGTATAAATGATTTTGAGACGCTGTCTTTATTTCCTTAAAGCGTT
CTTACCAAAAGTGAATAGCAAGGCCACgagaaaaagaaattccaataaaa
tagACAATTCGAAATGAATGTCCAtcaatttacacgttttttatacgaaa
aagtatatataagaaaatatggcttcaaaattaaaaaaattaagaaaacg
TTCAGAACATTTAAGGGCTTTGCAGACCCAAGAACATTTTATCTCTtaga
aattctttcaaaagtagTGAGTAAGGGTTaacaataagaacattttaaga
acattatcaggctttttaaacttaaaacttGTTCGTTCGTAAGTTTCCAa
gttttttatcgtttttataaaaaatacatgtATACTAAATGTAAtgtcat
ttatatttttacaaggGTGATGAGTAATAAAGTGCAAGCCCTCTACAACA
GGGAAGGCGTTAACCGAAAAGAGAAAAAGGCATCAGCGGACAGGGTTAGG
AAGAAGGCATTCAAAGAAACAAACTTTTACAAAGTTGTAATCGGTAAGTT
GACTACAATAGTGTTTCAACCATCATATGAGTTCGCTAATTTTTTGGACC
GCTTGGTTTAGTGAAGATAAGAGCTAAAAGCGCCATTTTGCCTATCCCTG
CCACAAAGTAAGTAAAGTCCAAGAGTAATAAACTTCGCTTAGTTTAACCG
GTGATTAGTGAAATcggatttctttcaaaccatctaTCCATcccttttga
aatcttttaattGTTGAAGTACTTGGAGTCATAATTATTATACTAGCTCT
AAAGAGATATCCggaacgttgttttaacgtcagAACGTTGTGTCTGCTGG
GATGAATcaatatcatttttaatgaggtttttatttttcattttagacaC
AGCTCTTTTAGTCAACAAAGATGCGACTGAAAAAGAGATTGTGGATGTGA
TTGGCAAAGAGTTATGTACTGCCCCAGACAGACTTGGTGGGGGAGGAAGG
GGGTCAGAAGAACAAACAGAGgattaattttcactttttgataaattata
tttataaagaaaaaaaataaaaa Coding sequence (CDS) from alignment at sc0003891:3094..4716+ >TCONS_00043057 ID=TCONS_00043057|Name=TCONS_00043057|organism=Clytia hemisphaerica|type=CDS|length=2388bp|location=Sequence derived from alignment at sc0003891:3094..4716+ (Clytia hemisphaerica)
AATTTATTCACTATATTTTTACCATACTTATTCATTATCATCActatatt
catttttttatcgtttgcagaattggaaaaaaatcaaaaacagttGCTTC
ATACGTTGATTGAAATTAGGCGCAACCAGCAACTCATTATCCAAAAGCTA
GACGTTGCTGGAACTTCTACAGATGCTGCTGGTTGTGGTCTTGATTTGGA
GCCATACACTAGAGATGAAGATTTTATGGAGTTCGATGCGCGAATTGCTG
ATGAAgaggaaagaaagaaattgATATTGGCACTCTCACGCATCGGTGGG
AAAAACGCGAAGGAGACAACAAAATTTATCTTGAGAAGgGTGATGAGTAA
TAAAGTGCAAGCCCTCTACAACAGGGAAGGCGTTAACCGAAAAGAGAAAA
AGGCATCAGCGGACAGGGTTAGGAAGAAGGCATTCAAAGAAACAAACTTT
TACAAAGTTGTAATCGacaCAGCTCTTTTAGTCAACAAAGATGCGACTGA
AAAAGAGATTGTGGATGTGATTGGCAAAGAGTTATGTACTGCCCCAGACA
GACTTGGTGGGGGAGGAAGGGGGTCAGAAGAACAAACAGAGgattaaAAT
TTATTCACTATATTTTTACCATACTTATTCATTATCATCActatattcat
ttttttatcgtttgcagaattggaaaaaaatcaaaaacagttGCTTCATA
CGTTGATTGAAATTAGGCGCAACCAGCAACTCATTATCCAAAAGCTAGAC
GTTGCTGGAACTTCTACAGATGCTGCTGGTTGTGGTCTTGATTTGGAGCC
ATACACTAGAGATGAAGATTTTATGGAGTTCGATGCGCGAATTGCTGATG
AAgaggaaagaaagaaattgATATTGGCACTCTCACGCATCGGTGGGAAA
AACGCGAAGGAGACAACAAAATTTATCTTGAGAAGgGTGATGAGTAATAA
AGTGCAAGCCCTCTACAACAGGGAAGGCGTTAACCGAAAAGAGAAAAAGG
CATCAGCGGACAGGGTTAGGAAGAAGGCATTCAAAGAAACAAACTTTTAC
AAAGTTGTAATCGacaCAGCTCTTTTAGTCAACAAAGATGCGACTGAAAA
AGAGATTGTGGATGTGATTGGCAAAGAGTTATGTACTGCCCCAGACAGAC
TTGGTGGGGGAGGAAGGGGGTCAGAAGAACAAACAGAGgattaaAATTTA
TTCACTATATTTTTACCATACTTATTCATTATCATCActatattcatttt
tttatcgtttgcagaattggaaaaaaatcaaaaacagttGCTTCATACGT
TGATTGAAATTAGGCGCAACCAGCAACTCATTATCCAAAAGCTAGACGTT
GCTGGAACTTCTACAGATGCTGCTGGTTGTGGTCTTGATTTGGAGCCATA
CACTAGAGATGAAGATTTTATGGAGTTCGATGCGCGAATTGCTGATGAAg
aggaaagaaagaaattgATATTGGCACTCTCACGCATCGGTGGGAAAAAC
GCGAAGGAGACAACAAAATTTATCTTGAGAAGgGTGATGAGTAATAAAGT
GCAAGCCCTCTACAACAGGGAAGGCGTTAACCGAAAAGAGAAAAAGGCAT
CAGCGGACAGGGTTAGGAAGAAGGCATTCAAAGAAACAAACTTTTACAAA
GTTGTAATCGacaCAGCTCTTTTAGTCAACAAAGATGCGACTGAAAAAGA
GATTGTGGATGTGATTGGCAAAGAGTTATGTACTGCCCCAGACAGACTTG
GTGGGGGAGGAAGGGGGTCAGAAGAACAAACAGAGgattaaAATTTATTC
ACTATATTTTTACCATACTTATTCATTATCATCActatattcattttttt
atcgtttgcagaattggaaaaaaatcaaaaacagttGCTTCATACGTTGA
TTGAAATTAGGCGCAACCAGCAACTCATTATCCAAAAGCTAGACGTTGCT
GGAACTTCTACAGATGCTGCTGGTTGTGGTCTTGATTTGGAGCCATACAC
TAGAGATGAAGATTTTATGGAGTTCGATGCGCGAATTGCTGATGAAgagg
aaagaaagaaattgATATTGGCACTCTCACGCATCGGTGGGAAAAACGCG
AAGGAGACAACAAAATTTATCTTGAGAAGgGTGATGAGTAATAAAGTGCA
AGCCCTCTACAACAGGGAAGGCGTTAACCGAAAAGAGAAAAAGGCATCAG
CGGACAGGGTTAGGAAGAAGGCATTCAAAGAAACAAACTTTTACAAAGTT
GTAATCGacaCAGCTCTTTTAGTCAACAAAGATGCGACTGAAAAAGAGAT
TGTGGATGTGATTGGCAAAGAGTTATGTACTGCCCCAGACAGACTTGGTG
GGGGAGGAAGGGGGTCAGAAGAACAAACAGAGgattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043057-exon-sc0003891-1491911889:3094..3368 | TCONS_00043057-exon-sc0003891-1491911889:3094..3368 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1510915933:3094..3368 | TCONS_00043057-exon-sc0003891-1510915933:3094..3368 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1575043694:3094..3368 | TCONS_00043057-exon-sc0003891-1575043694:3094..3368 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1491911889:3585..3649 | TCONS_00043057-exon-sc0003891-1491911889:3585..3649 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1510915933:3585..3649 | TCONS_00043057-exon-sc0003891-1510915933:3585..3649 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1575043694:3585..3649 | TCONS_00043057-exon-sc0003891-1575043694:3585..3649 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1491911889:4059..4186 | TCONS_00043057-exon-sc0003891-1491911889:4059..4186 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1510915933:4059..4186 | TCONS_00043057-exon-sc0003891-1510915933:4059..4186 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1575043694:4059..4186 | TCONS_00043057-exon-sc0003891-1575043694:4059..4186 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1491911889:4540..4716 | TCONS_00043057-exon-sc0003891-1491911889:4540..4716 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1510915933:4540..4716 | TCONS_00043057-exon-sc0003891-1510915933:4540..4716 | Clytia hemisphaerica | exon |
| TCONS_00043057-exon-sc0003891-1575043694:4540..4716 | TCONS_00043057-exon-sc0003891-1575043694:4540..4716 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003891 | supercontig | sc0003891:3094..4716 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032071 | DUF4806 |
Blast
The following BLAST results are available for this feature:
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