TCONS_00043052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043052
Unique NameTCONS_00043052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043052 ID=TCONS_00043052|Name=TCONS_00043052|organism=Clytia hemisphaerica|type=transcript|length=470bp
ATATATCTTTAAAAtcattcatttaaaattttacaattgtTTGGTAAATA
CAATAACAATTTCGATGCTAAAGGATAAAAAcgtaaaatattttgcaaaa
ctTTTTAGCACAGCCGATTGTCGTCGTGACCTATTTCTTGTGGGAAACAC
GCGTTCTGACAATGACAGACTAATctaaactttaaaaatacacaattaca
tatacaaaataacatcaaatttctaaaaaaattggtaaaattcaTCTTAC
CCCATCAGTTGTCTAGAGAATAAAGCTAAACACGAGTTCTTGAAATAATA
GTTCGTGCGCATTGTTTTGTAAACCCTTCAAATCGATTATAGTTAAACTG
AATAGTTAGGGTTTCATTAAAAAGGAACACCTTTTTATAGACTGTTTTTT
TGAAATGCTGCACTTTTCACGCAAAAGAATGAAAGAAAGGTCAAGCAGAa
attatctaaaataaataaaa
Run BLAST on NCBI

transcript from alignment at sc0003886:19..488

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043052 ID=TCONS_00043052|Name=TCONS_00043052|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at sc0003886:19..488 (Clytia hemisphaerica)
ttttatttattttagataattTCTGCTTGACCTTTCTTTCATTCTTTTGC
GTGAAAAGTGCAGCATTTCAAAAAAACAGTCTATAAAAAGGTGTTCCTTT
TTAATGAAACCCTAACTATTCAGTTTAACTATAATCGATTTGAAGGGTTT
ACAAAACAATGCGCACGAACTATTATTTCAAGAACTCGTGTTTAGCTTTA
TTCTCTAGACAACTGATGGGGTAAGAtgaattttaccaatttttttagaa
atttgatgttattttgtatatgtaattgtgtatttttaaagtttagATTA
GTCTGTCATTGTCAGAACGCGTGTTTCCCACAAGAAATAGGTCACGACGA
CAATCGGCTGTGCTAAAAagttttgcaaaatattttacgTTTTTATCCTT
TAGCATCGAAATTGTTATTGTATTTACCAAacaattgtaaaattttaaat
gaatgaTTTTAAAGATATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026794XLOC_026794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043052-exon-sc0003886-1491911889:19..488TCONS_00043052-exon-sc0003886-1491911889:19..488Clytia hemisphaericaexon
TCONS_00043052-exon-sc0003886-1510915933:19..488TCONS_00043052-exon-sc0003886-1510915933:19..488Clytia hemisphaericaexon
TCONS_00043052-exon-sc0003886-1575043694:19..488TCONS_00043052-exon-sc0003886-1575043694:19..488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003886supercontigsc0003886:19..488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190829	0	3.54057	4.78191	0.463353	0	0.215024	0	2.5878	2.29995	0.90651	0.753352	0.209451	0.113986	0.886318	1.35158	0.989749	0.848633	0.892595	0.352731	2.67917	3.10549	1.64698	1.96274	0	0	3.0135	3.16669	2.90088	1.72426
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top